QTL Accession ID | AQAG010 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | tp4 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 4 | ||||||||||
Comments | The tiller number per plant (tillers/plant) of 1998 was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 30,334,770-30,772,540 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 4 | 107.9-114.3 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQAG010 | 4 | 107.9 | 114.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G102 | RFLP | Oryza sativa | qtl_marker |
To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G235 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Hua-J-P et al., 2002 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hua-J-P et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 30,334,770 | 30,772,540 | ~160K SNPs x 20 accessions (McNally 2... | 134 | Search for SNPs |
chr4 | 30,334,770 | 30,772,540 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr4 | 30,334,770 | 30,772,540 | Huang X, et al, Nat Genetics 2010 Nov... | 985 | Search for SNPs |
chr4 | 30,334,770 | 30,772,540 | RiceDiversity 44K SNP assay, 34 trait... | 985 | Search for SNPs |
chr4 | 30,334,770 | 30,772,540 | RiceDiversity 44K SNP assay, 34 trait... | 42 | Search for SNPs |