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Oryza sativa QTL "AQAG008" (tiller number)
| QTL Accession ID | AQAG008 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | tp1 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 1 | ||||||||||
| Comments | The tiller number per plant (tillers/plant) of 1998 was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 41,967,890-42,955,596 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 245.3-253.6 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAG008 | 1 | 245.3 | 253.6 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG236 | RFLP | Oryza sativa | qtl_marker |
| To | C112 | RFLP | Oryza sativa | qtl_marker |
| To | C86 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Hua-J-P et al., 2002 (IAGP) |
| Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hua-J-P et al., 2002 (SM) |
Database Cross-References (1)
SNPs (5,779)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 41,967,890 | 42,955,596 | ~160K SNPs x 20 accessions (McNally 2... | 1,201 | Search for SNPs |
| chr1 | 41,967,890 | 42,955,596 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr1 | 41,967,890 | 42,955,596 | Huang X, et al, Nat Genetics 2010 Nov... | 1,855 | Search for SNPs |
| chr1 | 41,967,890 | 42,955,596 | RiceDiversity 44K SNP assay, 34 trait... | 1,855 | Search for SNPs |
| chr1 | 41,967,890 | 42,955,596 | RiceDiversity 44K SNP assay, 34 trait... | 861 | Search for SNPs |
