QTL Accession ID | AQAD003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SHBTRS | ||||
Trait Name | sheath blight disease resistance | ||||
Published Symbol | qSB-5 | ||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||
Chromosome | 5 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 26,934,304-27,342,124 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 5 | 114.4-116.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAD003 | 5 | 114.4 | 116.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C246 | RFLP | Oryza sativa | qtl_marker |
To | RM26 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM274 | SSR | Oryza sativa Indica Group | qtl_marker |
To | C1447 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000255) | Han-Y-P et al., 2002 (IAGP) |
Plant Structure | (PO:0020104) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007072) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Han-Y-P et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 26,934,304 | 27,342,124 | ~160K SNPs x 20 accessions (McNally 2... | 287 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | Huang X, et al, Nat Genetics 2010 Nov... | 312 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | RiceDiversity 44K SNP assay, 34 trait... | 312 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | RiceDiversity 44K SNP assay, 34 trait... | 53 | Search for SNPs |