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Oryza sativa QTL "AQAC035" (alpha amylase activity)
| QTL Accession ID | AQAC035 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ALPHAAMYASEACT |
| Trait Name | alpha amylase activity |
| Published Symbol | qAAA6-1 |
| Trait Synonym(s) | alpha-Amylase activity |
| Trait Category | Biochemical |
| Chromosome | 6 |
| Comments | The QTL is related with seedling vigor and associated physiological traits. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 29,027,995-30,823,968 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 171-196 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAC035 | 6 | 171 | 196 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG653 | RFLP | Oryza sativa | qtl_marker |
| To | G342 | RFLP | Oryza sativa | qtl_marker |
| To | RZ242 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000288) | Cui-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (10,235)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 29,027,995 | 30,823,968 | ~160K SNPs x 20 accessions (McNally 2... | 483 | Search for SNPs |
| chr6 | 29,027,995 | 30,823,968 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
| chr6 | 29,027,995 | 30,823,968 | Huang X, et al, Nat Genetics 2010 Nov... | 4,791 | Search for SNPs |
| chr6 | 29,027,995 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 4,791 | Search for SNPs |
| chr6 | 29,027,995 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 162 | Search for SNPs |
