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Oryza sativa QTL "AQAC029" (root length)
| QTL Accession ID | AQAC029 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | RTLG | ||||
| Trait Name | root length | ||||
| Published Symbol | qMRL1-2 | ||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 1 | ||||
| Comments | The QTL is related with seedling vigor and associated physiological traits. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,753,787-4,754,502 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 28.8-37.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAC029 | 1 | 28.8 | 37.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G359 | RFLP | Oryza sativa | qtl_marker |
| To | RG532 | RFLP | Oryza sativa | qtl_marker |
| To | R753 | RFLP | Oryza sativa | qtl_marker |
| To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000227) | Cui-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,753,787 | 4,754,502 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr1 | 4,753,787 | 4,754,502 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 4,753,787 | 4,754,502 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr1 | 4,753,787 | 4,754,502 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr1 | 4,753,787 | 4,754,502 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
