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Oryza sativa QTL "AQAC014" (total biomass yield)
| QTL Accession ID | AQAC014 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | TBIOMYLD |
| Trait Name | total biomass yield |
| Published Symbol | qTDW6-1 |
| Trait Synonym(s) |
dry matter yield total dry weight |
| Trait Category | Yield |
| Chromosome | 6 |
| Comments | The QTL is related with seedling vigor and associated physiological traits. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 24,916,395-28,640,569 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 131.9-166.8 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAC014 | 6 | 131.9 | 166.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R2549 | RFLP | Oryza sativa | qtl_marker |
| To | C962 | RFLP | Oryza sativa | qtl_marker |
| To | RG424 | RFLP | Oryza sativa | qtl_marker |
| To | RZ242 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000457) | Cui-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (16,671)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 24,916,395 | 28,640,569 | ~160K SNPs x 20 accessions (McNally 2... | 2,976 | Search for SNPs |
| chr6 | 24,916,395 | 28,640,569 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
| chr6 | 24,916,395 | 28,640,569 | Huang X, et al, Nat Genetics 2010 Nov... | 6,601 | Search for SNPs |
| chr6 | 24,916,395 | 28,640,569 | RiceDiversity 44K SNP assay, 34 trait... | 6,601 | Search for SNPs |
| chr6 | 24,916,395 | 28,640,569 | RiceDiversity 44K SNP assay, 34 trait... | 477 | Search for SNPs |
