QTL Accession ID | AQAB058 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
Trait Symbol | SPKNB | ||||||||||||||||
Trait Name | spikelet number | ||||||||||||||||
Published Symbol | qSSBp6-2 | ||||||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||||||
Chromosome | 6 | ||||||||||||||||
Comments | The QTL was detected from the phenotypic experiment of 2000. The trait is spikelets on secondary branching per panicle. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,260,721-2,575,680 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 18.5-21.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQAB058 | 6 | 18.5 | 21.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1952 | RFLP | Oryza sativa | qtl_marker |
To | R2749 | RFLP | Oryza sativa | qtl_marker |
To | C688 | RFLP | Oryza sativa | qtl_marker |
To | C1368 | RFLP | Oryza sativa | qtl_marker |
To | R1962 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000456) | Cui-K-H et al., 2002 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cui-K-H et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,260,721 | 2,575,680 | ~160K SNPs x 20 accessions (McNally 2... | 199 | Search for SNPs |
chr6 | 2,260,721 | 2,575,680 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr6 | 2,260,721 | 2,575,680 | Huang X, et al, Nat Genetics 2010 Nov... | 293 | Search for SNPs |
chr6 | 2,260,721 | 2,575,680 | RiceDiversity 44K SNP assay, 34 trait... | 293 | Search for SNPs |
chr6 | 2,260,721 | 2,575,680 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |