Oryza sativa QTL "AQAB016" (spikelet number)

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Oryza sativa QTL "AQAB016" (spikelet number)

QTL Accession ID

AQAB016

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

SPKNB

Trait Name

spikelet number

Published Symbol

qSSBp1-2

Trait Synonym(s)

NSS	SN	SP	TNS
TSN	average number of spikelets on one secondary branch	number of spikelets on primary branch	number of spikelets on second branch
number of spikelets per panicle	spikelet per panicle	spikelets on primary branch per panicle	spikelets on secondary branch per panicle
spikelets per primary branch	total spikelets per panicle

Trait Category

Yield

Chromosome

Comments

The QTL was detected from the phenotypic experiment of 1999. The trait is spikelets on secondary branching per panicle.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 1

4,753,787-4,754,502 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

CNHZAU Zh97/Ming63 RI QTL 2002

BNL6.32

28.8-37.3 cM

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Details

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQAB016	1	28.8	37.3

Associated Markers (4)

Direction	Name	Type	Species	Assoc. Type
To	G359	RFLP	Oryza sativa	qtl_marker
To	RG532	RFLP	Oryza sativa	qtl_marker
To	R753	RFLP	Oryza sativa	qtl_marker
To	RM259	SSR	Oryza sativa Indica Group	qtl_marker

Associated Genes (0)

Associated Ontologies (6)

Term Type	Term	Evidence
Trait Ontology	(TO:0000456)	Cui-K-H et al., 2002 (IAGP)
Plant Structure	(PO:0009051)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007044)	Gramene curators, 2007 (IC)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Cui-K-H et al., 2002 (SM)

Database Cross-References (1)

Gramene Literature	Cui-K-H, Peng-S-B, Xing-Y-Z, Yu-S-B, Xu-C-G, "Genetic analysis of the panicle traits related to yield sink size of rice", Acta genetica Sinica, 2002, vol. 29, pp. 144-152

SNPs (2)

Chr	Start	Stop	Exp	Num. SNP Positions
chr1	4,753,787	4,754,502	~160K SNPs x 20 accessions (McNally 2...	1	Search for SNPs
chr1	4,753,787	4,754,502	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr1	4,753,787	4,754,502	Huang X, et al, Nat Genetics 2010 Nov...	0
chr1	4,753,787	4,754,502	RiceDiversity 44K SNP assay, 34 trait...	0
chr1	4,753,787	4,754,502	RiceDiversity 44K SNP assay, 34 trait...	1	Search for SNPs