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Oryza sativa QTL "AQAB005" (panicle length)
| QTL Accession ID | AQAB005 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PNLG | ||||||
| Trait Name | panicle length | ||||||
| Published Symbol | qPL11-2 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 11 | ||||||
| Comments | The QTL was detected from the phenotypic experiment of 1999. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 2,235,151-2,449,648 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 11 | 146-148.6 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAB005 | 11 | 146 | 148.6 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R2918 | RFLP | Oryza sativa | qtl_marker |
| To | CDO127 | RFLP | Avena sativa | qtl_marker |
| To | C794 | RFLP | Oryza sativa | qtl_marker |
| To | R3202 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000040) | Cui-K-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-K-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (1,567)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 2,235,151 | 2,449,648 | ~160K SNPs x 20 accessions (McNally 2... | 58 | Search for SNPs |
| chr11 | 2,235,151 | 2,449,648 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr11 | 2,235,151 | 2,449,648 | Huang X, et al, Nat Genetics 2010 Nov... | 749 | Search for SNPs |
| chr11 | 2,235,151 | 2,449,648 | RiceDiversity 44K SNP assay, 34 trait... | 749 | Search for SNPs |
| chr11 | 2,235,151 | 2,449,648 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |
