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Oryza sativa QTL "AQAB003" (panicle length)
| QTL Accession ID | AQAB003 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PNLG | ||||||
| Trait Name | panicle length | ||||||
| Published Symbol | qPL10-1 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 10 | ||||||
| Comments | The QTL was detected from the phenotypic experiment of 1999. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 18,014,265-21,814,948 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 10 | 61-106.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAB003 | 10 | 61 | 106.9 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM258 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM304 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | G4003 | RFLP | Oryza sativa | qtl_marker |
| To | R2625 | RFLP | Oryza sativa | qtl_marker |
| To | RG561 | RFLP | Oryza sativa | qtl_marker |
| To | C677 | RFLP | Oryza sativa | qtl_marker |
| To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000040) | Cui-K-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-K-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (9,142)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 18,014,265 | 21,814,948 | ~160K SNPs x 20 accessions (McNally 2... | 1,573 | Search for SNPs |
| chr10 | 18,014,265 | 21,814,948 | '1536 chip' - 1311 SNPs x 395 rice ac... | 15 | Search for SNPs |
| chr10 | 18,014,265 | 21,814,948 | Huang X, et al, Nat Genetics 2010 Nov... | 3,605 | Search for SNPs |
| chr10 | 18,014,265 | 21,814,948 | RiceDiversity 44K SNP assay, 34 trait... | 3,605 | Search for SNPs |
| chr10 | 18,014,265 | 21,814,948 | RiceDiversity 44K SNP assay, 34 trait... | 344 | Search for SNPs |
