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Oryza sativa QTL "AQAB001" (panicle length)
| QTL Accession ID | AQAB001 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PNLG | ||||||
| Trait Name | panicle length | ||||||
| Published Symbol | qPL3-1 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 3 | ||||||
| Comments | The QTL was detected from the phenotypic experiment of 1999. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 34,925,198-35,443,016 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 3 | 182.1-186.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAB001 | 3 | 182.1 | 186.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM227 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | R1925 | RFLP | Oryza sativa | qtl_marker |
| To | RM200 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM148 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000040) | Cui-K-H et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cui-K-H et al., 2002 (SM) |
Database Cross-References (1)
SNPs (3,424)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 34,925,198 | 35,443,016 | ~160K SNPs x 20 accessions (McNally 2... | 332 | Search for SNPs |
| chr3 | 34,925,198 | 35,443,016 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr3 | 34,925,198 | 35,443,016 | Huang X, et al, Nat Genetics 2010 Nov... | 1,513 | Search for SNPs |
| chr3 | 34,925,198 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 1,513 | Search for SNPs |
| chr3 | 34,925,198 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 65 | Search for SNPs |
