QTL Accession ID | AQA024 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTNB | ||||||||
Trait Name | root number | ||||||||
Published Symbol | qTRN7-1 | ||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||
Chromosome | 7 | ||||||||
Comments | Trait was measured at 65 DAS (days after seeding). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 6,779,215-20,733,138 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 7 | 30.1-59.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQA024 | 7 | 30.1 | 59.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG477 | RFLP | Oryza sativa | qtl_marker |
To | RM501 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM325 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM214 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM542 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM2 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM500 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM445 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM533 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM418 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM432 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM11 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM560 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | CDO59 | RFLP | Avena sativa | qtl_marker |
To | RM125 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM336 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM182 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000084) | Hemamalini-G-S et al., 2000 (IAGP) |
Plant Structure | (PO:0009005) | Hemamalini-G-S et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
(PO:0007130) | Hemamalini-G-S et al., 2000 (SM) | |
Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
(GRO:0007140) | Hemamalini-G-S et al., 2000 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 6,779,215 | 20,733,138 | ~160K SNPs x 20 accessions (McNally 2... | 2,127 | Search for SNPs |
chr7 | 6,779,215 | 20,733,138 | '1536 chip' - 1311 SNPs x 395 rice ac... | 28 | Search for SNPs |
chr7 | 6,779,215 | 20,733,138 | Huang X, et al, Nat Genetics 2010 Nov... | 36,620 | Search for SNPs |
chr7 | 6,779,215 | 20,733,138 | RiceDiversity 44K SNP assay, 34 trait... | 36,620 | Search for SNPs |
chr7 | 6,779,215 | 20,733,138 | RiceDiversity 44K SNP assay, 34 trait... | 780 | Search for SNPs |