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Oryza sativa QTL "AQA021" (root number)
| QTL Accession ID | AQA021 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
| Trait Symbol | RTNB | ||||||||
| Trait Name | root number | ||||||||
| Published Symbol | qTRN1-1 | ||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||
| Chromosome | 1 | ||||||||
| Comments | Trait was measured at 65 DAS (days after seeding). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 1,039,086-4,214,192 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 9.3-27.1 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQA021 | 1 | 9.3 | 27.1 |
Associated Markers (10)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG472 | RFLP | Oryza sativa | qtl_marker |
| To | RM476 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM428 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM84 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM323 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG246 | RFLP | Oryza sativa | qtl_marker |
| To | RM462 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM495 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM220 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM86 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000084) | Hemamalini-G-S et al., 2000 (IAGP) |
| Plant Structure | (PO:0009005) | Hemamalini-G-S et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
| (PO:0007130) | Hemamalini-G-S et al., 2000 (SM) | |
| Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
| (GRO:0007140) | Hemamalini-G-S et al., 2000 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Database Cross-References (1)
SNPs (15,378)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 1,039,086 | 4,214,192 | ~160K SNPs x 20 accessions (McNally 2... | 2,581 | Search for SNPs |
| chr1 | 1,039,086 | 4,214,192 | '1536 chip' - 1311 SNPs x 395 rice ac... | 15 | Search for SNPs |
| chr1 | 1,039,086 | 4,214,192 | Huang X, et al, Nat Genetics 2010 Nov... | 6,162 | Search for SNPs |
| chr1 | 1,039,086 | 4,214,192 | RiceDiversity 44K SNP assay, 34 trait... | 6,162 | Search for SNPs |
| chr1 | 1,039,086 | 4,214,192 | RiceDiversity 44K SNP assay, 34 trait... | 458 | Search for SNPs |
