QTL Accession ID | AQA016 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | RTLG | ||||
Trait Name | root length | ||||
Published Symbol | qRTL4-2 | ||||
Trait Synonym(s) |
|
||||
Trait Category | Anatomy | ||||
Chromosome | 4 | ||||
Comments | Trait was measured at 65 DAS (days after seeding). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 31,662,839-33,664,487 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 135.4-146.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQA016 | 4 | 135.4 | 146.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG214 | RFLP | Oryza sativa | qtl_marker |
To | RZ590 | RFLP | Oryza sativa | qtl_marker |
To | RG143 | RFLP | Oryza sativa | qtl_marker |
To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM131 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000227) | Hemamalini-G-S et al., 2000 (IAGP) |
Plant Structure | (PO:0009005) | Hemamalini-G-S et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 31,662,839 | 33,664,487 | ~160K SNPs x 20 accessions (McNally 2... | 873 | Search for SNPs |
chr4 | 31,662,839 | 33,664,487 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr4 | 31,662,839 | 33,664,487 | Huang X, et al, Nat Genetics 2010 Nov... | 5,820 | Search for SNPs |
chr4 | 31,662,839 | 33,664,487 | RiceDiversity 44K SNP assay, 34 trait... | 5,820 | Search for SNPs |
chr4 | 31,662,839 | 33,664,487 | RiceDiversity 44K SNP assay, 34 trait... | 224 | Search for SNPs |