QTL Accession ID | AQA009 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | qNOT-8-1 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 8 | ||||||||||
Comments | Trait was measured at 65 DAS (days after seeding). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 2,114,843-15,438,317 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 8 | 24.8-69 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQA009 | 8 | 24.8 | 69 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG20 | RFLP | Oryza sativa | qtl_marker |
To | RM38 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM25 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM310 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM126 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM544 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM547 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM330 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM72 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM137 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM331 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM325 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM44 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ617 | RFLP | Oryza sativa | qtl_marker |
To | RM483 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM404 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ143 | RFLP | Oryza sativa | qtl_marker |
To | RG978 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Hemamalini-G-S et al., 2000 (IAGP) |
Plant Structure | (PO:0005001) | Hemamalini-G-S et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Hemamalini-G-S et al., 2000 (SM) |
Growth Stage | (GRO:0007049) | Hemamalini-G-S et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 2,114,843 | 15,438,317 | ~160K SNPs x 20 accessions (McNally 2... | 3,457 | Search for SNPs |
chr8 | 2,114,843 | 15,438,317 | '1536 chip' - 1311 SNPs x 395 rice ac... | 37 | Search for SNPs |
chr8 | 2,114,843 | 15,438,317 | Huang X, et al, Nat Genetics 2010 Nov... | 25,476 | Search for SNPs |
chr8 | 2,114,843 | 15,438,317 | RiceDiversity 44K SNP assay, 34 trait... | 25,476 | Search for SNPs |
chr8 | 2,114,843 | 15,438,317 | RiceDiversity 44K SNP assay, 34 trait... | 1,007 | Search for SNPs |