QTL Accession ID | AQA008 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | qNOT4-2 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 4 | ||||||||||
Comments | Trait was measured at 65 DAS (days after seeding). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,579,760-20,519,179 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 50.8-69.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQA008 | 4 | 50.8 | 69.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM185 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG449 | RFLP | Oryza sativa | qtl_marker |
To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM417 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM142 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG788 | RFLP | Oryza sativa | qtl_marker |
To | RG91 | RFLP | Oryza sativa | qtl_marker |
To | RM564 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Hemamalini-G-S et al., 2000 (IAGP) |
Plant Structure | (PO:0005001) | Hemamalini-G-S et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Hemamalini-G-S et al., 2000 (SM) |
Growth Stage | (GRO:0007049) | Hemamalini-G-S et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 18,579,760 | 20,519,179 | ~160K SNPs x 20 accessions (McNally 2... | 1,101 | Search for SNPs |
chr4 | 18,579,760 | 20,519,179 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
chr4 | 18,579,760 | 20,519,179 | Huang X, et al, Nat Genetics 2010 Nov... | 5,686 | Search for SNPs |
chr4 | 18,579,760 | 20,519,179 | RiceDiversity 44K SNP assay, 34 trait... | 5,686 | Search for SNPs |
chr4 | 18,579,760 | 20,519,179 | RiceDiversity 44K SNP assay, 34 trait... | 248 | Search for SNPs |