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Oryza sativa QTL "AQA002" (plant height)
| QTL Accession ID | AQA002 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PTHT | ||||
| Trait Name | plant height | ||||
| Published Symbol | qPHT3-2 | ||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||
| Chromosome | 3 | ||||
| Comments | Trait was measured at 85 DAS (days after seeding). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 28,788,986-28,813,128 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 3 | 163.5-165.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQA002 | 3 | 163.5 | 165.9 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ519 | RFLP | Oryza sativa | qtl_marker |
| To | RZ448 | RFLP | Oryza sativa | qtl_marker |
| To | CDO337 | RFLP | Avena sativa | qtl_marker |
| To | RM55 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM186 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000207) | Hemamalini-G-S et al., 2000 (IAGP) |
| Plant Structure | (PO:0009006) | Hemamalini-G-S et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Database Cross-References (1)
SNPs (164)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 28,788,986 | 28,813,128 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 28,788,986 | 28,813,128 | Huang X, et al, Nat Genetics 2010 Nov... | 81 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 81 | Search for SNPs |
| chr3 | 28,788,986 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
