Oryza sativa (japonica cultivar-group) protein "Q5TM89" (yellow stripe 1-like)

Accession

Q5TM89

Species

Oryza sativa (japonica cultivar-group) [ GR_tax:013684 ]

Name

yellow stripe 1-like

Symbol

YSL2

Synonyms (2)

OsYSL2

YS1-like metal-nicotianamine transporter

E.C. Numbers (0)

None

Gene Names (1)

YSL2 (yellow stripe 1-like)

Organelle

Not available

Best Hits To TIGR Rice Gene Models (0)

None [ Click here to generate a BLASTP query ]

IRGSP/RAP Genes (1)

Os02g0649900

Source

TREMBL

GenBank Accessions (1)

BAD72770

UniProt Accession (Sequence)

Q5TM89

Cultivar

None.

Comment

OsYSL2 is a rice metal-nicotianamine transporter, its expression was induced in the leaves by the iron deficiency. OsYSL2:GFP was localized in the plasma membrane.OsYSL2:GUS activity was detected in companion cells in iron deficient roots. In the leaves and leaf sheaths of iron-sufficient rice, GUS staining was observed in phloem cells of the vascular bundles, suggesting OsYSL2 is involved in the pholem transport of iron. Analysis showed OsYSL2 transported iron(III)-nicotianamine (NA) and manganese(II)-NA, but did not transport iron(III)-phyosiderophore. Expression in developing seed suggests the translocation of iron and manganese into the grain. (Imported from Gene GR:0080050)

Term Type	Term	Reference	Evidence
Molecular Function	metal ion transmembrane transporter activity (GO:0046873)	Jaiswal-P et al., 2006	IC
	iron ion transmembrane transporter activity (GO:0005381)	Jaiswal-P et al., 2006	IC
Biological Process	iron ion transport (GO:0006826)	Jaiswal-P et al., 2006	IC
	metal ion transport (GO:0030001)	Jaiswal-P et al., 2006	IC
Cellular Component	membrane (GO:0016020)	Jaiswal-P et al., 2004	RCA
	plasma membrane (GO:0005886)	Jaiswal-P et al., 2006	IC
Plant Structure	spikelet (PO:0009051)	Jaiswal-P et al., 2006	IC
	phloem (PO:0005417)	Jaiswal-P et al., 2006	IC
	PO:0006456 (PO:0006456)	Jaiswal-P et al., 2006	IC
	companion cell (PO:0000071)	Jaiswal-P et al., 2006	IC
	plant embryo (PO:0009009)	Jaiswal-P et al., 2006	IC
	vascular bundle (PO:0005020)	Jaiswal-P et al., 2006	IC
Plant Growth and Development Stage	developing seed stage (PO:0004506)	Jaiswal-P et al., 2006	IC
Trait	iron sensitivity (TO:0000224)	Jaiswal-P et al., 2006	IC

Term Type

Term

Reference

Evidence

Molecular Function

metal ion transmembrane transporter activity (GO:0046873)

Jaiswal-P et al., 2006

iron ion transmembrane transporter activity (GO:0005381)

Jaiswal-P et al., 2006

Biological Process

iron ion transport (GO:0006826)

Jaiswal-P et al., 2006

metal ion transport (GO:0030001)

Jaiswal-P et al., 2006

Cellular Component

membrane (GO:0016020)

Jaiswal-P et al., 2004

RCA

plasma membrane (GO:0005886)

Jaiswal-P et al., 2006

Plant Structure

spikelet (PO:0009051)

Jaiswal-P et al., 2006

phloem (PO:0005417)

Jaiswal-P et al., 2006

PO:0006456 (PO:0006456)

Jaiswal-P et al., 2006

companion cell (PO:0000071)

Jaiswal-P et al., 2006

plant embryo (PO:0009009)

Jaiswal-P et al., 2006

vascular bundle (PO:0005020)

Jaiswal-P et al., 2006

Plant Growth and Development Stage

developing seed stage (PO:0004506)

Jaiswal-P et al., 2006

Trait

iron sensitivity (TO:0000224)

Jaiswal-P et al., 2006

Viridiplantae Green plants -Embryophytes (plants) -Magnoliophytes (flowering plants) -Monocots \| Grasses \| Rice \| Maize \| Sorghum \| Wheat \| Barley \| Rye \| Oat \| Sugarcane -Dicots \| Brassicaceae \| Arabidopsis \| Fabaceae (Legumes) \| Solanaceae \| Cucurbitaceae
Others : Fungi \| Metazoa
3D protein structures : BLink from NCBI

Protein Features (18)

Feature Type	Residues (From - To)	Evidence
Pfam (Info)	PF03169; OPT	All Members of this Family
Prosite (Info)	Not available
Physio-chemical features	Q5TM89
ProtoMap (Info)	Q5TM89_ORYSA
Transmembrane	37 - 55	Jaiswal-P et al., 2004
Transmembrane	59 - 81	Jaiswal-P et al., 2004
Transmembrane	114 - 136	Jaiswal-P et al., 2004
Transmembrane	162 - 184	Jaiswal-P et al., 2004
Transmembrane	225 - 244	Jaiswal-P et al., 2004
Transmembrane	264 - 286	Jaiswal-P et al., 2004
Transmembrane	288 - 305	Jaiswal-P et al., 2004
Transmembrane	320 - 342	Jaiswal-P et al., 2004
Transmembrane	391 - 413	Jaiswal-P et al., 2004
Transmembrane	418 - 440	Jaiswal-P et al., 2004
Transmembrane	505 - 527	Jaiswal-P et al., 2004
Transmembrane	542 - 561	Jaiswal-P et al., 2004
Transmembrane	568 - 587	Jaiswal-P et al., 2004
Transmembrane	602 - 624	Jaiswal-P et al., 2004
Transmembrane	631 - 653	Jaiswal-P et al., 2004