Accession | A9JTY5 |
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Species | Oryza sativa (japonica cultivar-group) [ GR_tax:013684 ] |
Name | Transcription factor IDEF1 |
Symbol | IDEF1 |
Synonyms (0) | |
E.C. Numbers (0) | None |
Gene Names (1) | IDEF1 (Transcription factor IDEF1) |
Organelle | Not available |
Best Hits To TIGR Rice Gene Models (0) | None [ Click here to generate a BLASTP query ] |
IRGSP/RAP Genes (0) | None |
Source | TREMBL |
GenBank Accessions (1) | FAA00380 |
UniProt Accession (Sequence) | A9JTY5 |
Cultivar | None. |
Comment | Rice transcription factor IDEF1 specifically binds the iron deficiency-responsive cis-acting element IDE1. IDEF1 belongs to an uncharacterized branch of the plant-specific transcription factor family ABI3/VP1 and exhibits the sequence recognition property of efficiently binding to the GATGC sequence of IDE1. IDEF1 are constitutively present in rice roots and leaves. Transgenic studies show IDEF1 transactivates IDE1-mediated expression only in iron-deficient roots; Induced IDEF1 exhibit substantial tolerance to iron deficiency in both hydroponic culture and calcareous soil. Overexpression of IDEF1 enhances expression of the ion deficiency-induced transcription factor gene OsIRO2. (Imported from Gene GR:0080043) Rice transcription factor IDEF1 specifically binds the iron deficiency-responsive cis-acting element IDE1. IDEF1 belongs to an uncharacterized branch of the plant-specific transcription factor family ABI3/VP1 and exhibits the sequence recognition property of efficiently binding to the GATGC sequence of IDE1. IDEF1 are constitutively present in rice roots and leaves. IDEF1-GFP fusion localized to the nucleus. Transgenic studies show IDEF1 transactivates IDE1-mediated expression only in iron-deficient roots; Induced IDEF1 exhibit substantial tolerance to iron deficiency in both hydroponic culture and calcareous soil. Overexpression of IDEF1 enhances expression of the ion deficiency-induced transcription factor gene OsIRO2. (Imported from Gene GR:0080043) Rice transcription factor IDEF1 specifically binds the iron deficiency-responsive cis-acting element IDE1. IDEF1 belongs to an uncharacterized branch of the plant-specific transcription factor family ABI3/VP1 and exhibits the sequence recognition property of efficiently binding to the GATGC sequence of IDE1. IDEF1 are constitutively present in rice roots and leaves. IDEF1-GFP fusion localized to the nucleus. Transgenic studies show IDEF1 transactivates IDE1-mediated expression only in iron-deficient roots; Induced IDEF1 exhibit substantial tolerance to iron deficiency in both hydroponic culture and calcareous soil. Overexpression of IDEF1 enhances expression of the ion deficiency-induced transcription factor gene OsIRO2. (Imported from Gene GR:0080043) |
Term Type | Term | Reference | Evidence |
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Molecular Function | sequence-specific DNA binding (GO:0043565) | Jaiswal-P et al., 2006 | IC |
sequence-specific DNA binding transcription factor activity (GO:0003700) | Jaiswal-P et al., 2006 | IC | |
Biological Process | GO:0045449 (GO:0045449) | Jaiswal-P et al., 2006 | IC |
Plant Structure | root (PO:0009005) | Jaiswal-P et al., 2006 | IC |
vascular leaf (PO:0009025) | Jaiswal-P et al., 2006 | IC | |
Trait | iron sensitivity (TO:0000224) | Jaiswal-P et al., 2006 | IC |
chlorophyll content (TO:0000495) | Jaiswal-P et al., 2006 | IC | |
plant height (TO:0000207) | Jaiswal-P et al., 2006 | IC |
Viridiplantae Green plants -Embryophytes (plants) -Magnoliophytes (flowering plants) -Monocots | Grasses | Rice | Maize | Sorghum | Wheat | Barley | Rye | Oat | Sugarcane   -Dicots | Brassicaceae | Arabidopsis | Fabaceae (Legumes) | Solanaceae | Cucurbitaceae |
Others : Fungi | Metazoa |
3D protein structures : BLink from NCBI |
Pfam (Info) | PF02362; B3 | All Members of this Family | |
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Prosite (Info) | PS50863; B3 | Sequence info. not available All Members of this Family |
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Physio-chemical features | A9JTY5 | ||
ProtoMap (Info) | A9JTY5_ORYSJ |