ID | 11842 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Name | WX1 (GENE SYMBOL) | ||||||||||||
Synonyms (12) |
|
||||||||||||
GENE SYMBOL | wx | ||||||||||||
GRAMENE GENE | GR:0061010 | ||||||||||||
Type | Gene | ||||||||||||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||||||||
Germplasm | |||||||||||||
Description | The Waxy (Wx) gene encodes a granule-bound starch synthase (GBSS) that plays a key role in the amylose synthesis of rice. It is expressed in the seed endosperm and pollen grains, that carry starch grains. At sub-cellular level the protein is localized in the amyloplasts. This gene undergoes alternative splicing of its transcripts suggesting that the amylose content of rice endosperm is regulated at the level of Wx transcript processing, and more specifically, at the stage of intron I excision from the Wx pre-mRNA. The alternative splicing is affected by the change in temperature. It is a single copy gene in rice. The phenotype shows white and non-translucent endosperm which turns brown to the iodine staining. |
||||||||||||
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | GR:0061010 |
Chromosome | 6 |
Has Phenotype | yes |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,764,623-1,769,657 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | IGCN sativa/eichingeri RFLP | BNL6.32 | 6 | 0-0 cM | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell RFLP 1994 | BNL6.32 | 6 | -1.5--1.5 cM | View Comparative Map | |||
|
||||||||
Cornell RFLP 2001 | BNL6.32 | 6 | 6.7-6.7 cM | View Comparative Map | ||||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQBP002 | ISS |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Molecular Function | glycogen (starch) synthase activity | GO:0004373 | Search |
Biological Process | starch metabolic process | GO:0005982 | Search |
Cellular Component | amyloplast | GO:0009501 | Search |
Cellular Component | plastid | GO:0009536 | Search |
Cellular Component | amyloplast starch grain | GO:0009568 | Search |
Plant Structure | endosperm | PO:0009089 | Search |
Trait | glutinous endosperm | TO:0000098 | Search |