ID | 12191 | ||||||||
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Name | sk2 (GENE SYMBOL) | ||||||||
Synonyms (8) |
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GRAMENE GENE | GR:0060894 | ||||||||
Type | Gene | ||||||||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||||
Germplasm | |||||||||
Description | sk1 also called as fgr is linked to one of the most important traits in rice, i.e. fragrance. This trait has undergone human selection during domestication. The fragrance of basmati and jasmine rice is associated with the presence of 2-acetyl-1- pyrroline. sk1 encodes for betaine aldehyde dehydrogenase (BAD). Compared to the non-fragrant genotypes, the accumulation of 2-acetyl-1-pyrroline in fragrant rice genotypes is due to the loss of BAD activity. The allele in fragrant genotypes has a mutation introducing a stop codon upstream of key amino acid sequences conserved in other BADs. Another fragrance related gene called BAD1 is present on chromosome 4. The loss of function of SK1 does not affect the growth of fragrant rice genotypes. |
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Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | GR:0060894 |
Chromosome | 8 |
Has Phenotype | yes |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 20,377,081-20,383,348 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | IGCN 1998 | BNL6.32 | 8 | 85.1-114.6 cM | View Comparative Map | |||
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JRGP RFLP 2000 | BNL6.32 | 8 | 71.7-72.2 cM | View Comparative Map | ||||
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KRGRP 1998 | BNL6.32 | 8 | 78.6-104.1 cM | View Comparative Map | ||||
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Term Type | Term Name | Term Accession | |
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Cellular Component | peroxisome | GO:0005777 | Search |
Biological Process | response to stress | GO:0006950 | Search |
Molecular Function | betaine-aldehyde dehydrogenase activity | GO:0008802 | Search |
Biological Process | phenylpropanoid metabolic process | GO:0009698 | Search |
Biological Process | glycine betaine biosynthetic process | GO:0031456 | Search |
Plant Structure | whole plant | PO:0000003 | Search |
Plant Growth and Development Stage | whole plant development stage | PO:0007033 | Search |
Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
Plant Structure | seed | PO:0009010 | Search |
Plant Structure | plant structure | PO:0009011 | Search |
Plant Growth and Development Stage | plant structure development stage | PO:0009012 | Search |
Trait | aroma | TO:0000087 | Search |