ID | 11657 | ||||||
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Name | gh2 (GENE SYMBOL) | ||||||
Synonyms (6) |
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GRAMENE GENE | GR:0060366 | ||||||
Type | Gene | ||||||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||
Germplasm | |||||||
Description | The gene encodes a cinnamyl alcohol dehydrogenase (CAD) enzyme (EC:1.1.1.195). It is an ortholog of the CAD gene present at the bm1 (brown midrib 1) locus of maize (GR:0200056). The gene is expressed in the vascular tissue of panicles, hull, leaf midribs, leaf sheath, internodes and young roots. It is a key enzyme that regulates lignin content and plays a role in the lignin biosynthesis. In root tissue, it is expressed in the cortical parenchyma adjacent to the exodermis and in vascular tissue. The associated phenotype shows, brownish green lemma and palea at panicle exsertion and deep golden yellow hull at maturity. Golden internode has more intensified color. (Yellow pigment accumulates in cell wall). Reduction in lignin content. Simlar to gh1. |
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Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | GR:0060366 |
Chromosome | 2 |
Has Phenotype | yes |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 4,870,139-4,874,079 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Hokkaido Morphological 2000 | BNL6.32 | 2 | 20-20 cM | View Comparative Map | |||
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JRGP RFLP 2000 | BNL6.32 | 2 | 21.2-25.5 cM | View Comparative Map | ||||
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Term Type | Term Name | Term Accession | |
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Molecular Function | alcohol dehydrogenase activity, zinc-dependent | GO:0004024 | Search |
Molecular Function | zinc ion binding | GO:0008270 | Search |
Molecular Function | electron carrier activity | GO:0009055 | Search |
Biological Process | lignin biosynthetic process | GO:0009809 | Search |
Molecular Function | heme binding | GO:0020037 | Search |
Biological Process | electron transport chain | GO:0022900 | Search |
Molecular Function | cinnamyl-alcohol dehydrogenase activity | GO:0045551 | Search |
Cereal Plant Growth Stage | 08-dough stage | GRO:0007042 | Search |
Cereal Plant Growth Stage | 06-heading stage | GRO:0007044 | Search |
Cereal Plant Growth Stage | 09-mature grain stage | GRO:0007045 | Search |
Cereal Plant Growth Stage | 07-milk stage | GRO:0007046 | Search |
Cereal Plant Growth Stage | 1-4 leaf stage | GRO:0007142 | Search |
Plant Structure | leaf vascular system | PO:0000036 | Search |
Trait | shoot axis vascular system | PO:0000039 | Search |
Plant Structure | root vascular system | PO:0003011 | Search |
Plant Growth and Development Stage | whole plant fruit ripening stage | PO:0007010 | Search |
Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
Plant Growth and Development Stage | inflorescence emergence stage | PO:0007041 | Search |
Plant Growth and Development Stage | whole plant fruit formation stage | PO:0007042 | Search |
Plant Growth and Development Stage | LP.01 one leaf visible stage | PO:0007094 | Search |
Plant Growth and Development Stage | LP.02 two leaves visible stage | PO:0007098 | Search |
Plant Growth and Development Stage | LP.03 three leaves visible stage | PO:0007106 | Search |
Plant Growth and Development Stage | LP.04 four leaves visible stage | PO:0007115 | Search |
Plant Structure | root | PO:0009005 | Search |
Plant Structure | seed | PO:0009010 | Search |
Plant Structure | inflorescence | PO:0009049 | Search |
Plant Structure | leaf sheath | PO:0020104 | Search |
Plant Structure | stem internode | PO:0020142 | Search |
Trait | lemma and palea color | TO:0000264 | Search |
Trait | internode color | TO:0000426 | Search |
Trait | lignin monomer content | TO:0000732 | Search |
Trait | lignin biosynthesis trait | TO:0000733 | Search |