ID | 4873 | ||||||||
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Name | CDO1387 (GRAINGENES PROBE) | ||||||||
Synonyms (7) |
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MAIZEGDB PROBE | p-cdo1387 | ||||||||
Type | RFLP | ||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||
Germplasm | |||||||||
Description | |||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO1387 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0.8 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0100 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | F | 59.8-59.8 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 4A | 34-34 cM | View Comparative Map | |||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 4A | 17.3-17.3 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 4A | 17.3-17.3 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 4A | 34-34 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 3 | 18.3-18.3 cM | View Comparative Map | |||
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BNL6.32 | 10 | -5.8--5.8 cM | View Comparative Map | |||||
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Cornell RFLP 2001 | BNL6.32 | 10 | 5.2-5.2 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 1 | 67.7-67.7 cM | View Comparative Map | |||
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Cornell Wilson 1999 | BNL6.32 | 9 | 118.8-118.8 cM | View Comparative Map | ||||
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IBM 2002 | BNL6.32 | 1 | 199.7-199.7 cM | View Comparative Map | ||||
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UMC 1998 | BNL6.32 | 9 | 113.5-113.5 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-01 | 190.6-190.6 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 1 | 137.3-137.3 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | C | 83.9-83.9 cM | View Comparative Map | ||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 1 | 138.2-138.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 7,226,371-7,226,592 bp | View Comparative Map | |||
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BNL6.32 | Chr. 3 | 7,226,635-7,226,860 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 10 | 839,443-839,956 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Sorghum bicolor | QTL | AQGN001 | qtl_marker |
Sorghum bicolor | QTL | AQGN003 | qtl_marker |
Sorghum bicolor | QTL | AQHL001 | qtl_marker |
Sorghum bicolor | QTL | AQHL013 | qtl_marker |
Sorghum bicolor | QTL | AQHL017 | qtl_marker |
Sorghum bicolor | QTL | AQHL019 | qtl_marker |
Sorghum bicolor | QTL | AQHL027 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 1.03 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 9.06 | bin_marker |
Sorghum propinquum | FISH Probe | spb-9.06_L72 (cdo1387(emp70)) | hybridisation |
Avena sativa | Probed Site | cdo1387a(emp70) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1387b(emp70) | maizegdb_to_gramene |
Avena sativa | EST | AA231881 | related_sequence |
Avena sativa | EST | AA231831 | related_sequence |
CDO1387 BROWS Autorad: Survey blot of the probe CDO1387 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO1387 SL Autorad: Survey blot of the probe CDO1387 for the BS125/2/BS125/WLO2 population |