ID | 4867 | ||||||||||||||||||||
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Name | CDO344 (GRAINGENES PROBE) | ||||||||||||||||||||
Synonyms (17) |
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Deprecated Gramene Marker Acc | CDO344-1 | ||||||||||||||||||||
MAIZEGDB PROBE | p-cdo344 | ||||||||||||||||||||
Type | RFLP | ||||||||||||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||||||||||||
Germplasm | |||||||||||||||||||||
Description | |||||||||||||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO344 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.6 |
Vector Excision Enzyme | EcoRI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0106 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | F | 55.3-55.3 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 30 | 11.6-11.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Tadmor/Er Apm RI RFLP/AFLP/SSR QTL 1998 | BNL6.32 | 5H | 117.7-117.7 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 9a | 177-177 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 12 | 84.2-84.2 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 12 | 95.9-95.9 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Huazhong RFLP 1997 | BNL6.32 | 12 | 80.5-80.5 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-08 | 99.2-104.2 cM | View Comparative Map | |||
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Paterson 2003 | BNL6.32 | C | 107.7-107.7 cM | View Comparative Map | ||||
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BNL6.32 | I | 12.3-12.3 cM | View Comparative Map | |||||
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BNL6.32 | J | 75.5-75.5 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 1 | 114.5-114.5 cM | View Comparative Map | |||
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BNL6.32 | 3 | 76.6-76.6 cM | View Comparative Map | |||||
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Cornell Wilson 1999 | BNL6.32 | 1 | 103.3-103.3 cM | View Comparative Map | ||||
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BNL6.32 | 3 | 48.8-48.8 cM | View Comparative Map | |||||
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BNL6.32 | 4 | 0-0 cM | View Comparative Map | |||||
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IBM 2002 | BNL6.32 | 1 | 414.5-414.5 cM | View Comparative Map | ||||
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BNL6.32 | 3 | 263.9-263.9 cM | View Comparative Map | |||||
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UMC 1998 | BNL6.32 | 1 | 100.9-100.9 cM | View Comparative Map | ||||
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BNL6.32 | 3 | 67.9-67.9 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-23,603,428 bp | View Comparative Map | |||
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BNL6.32 | Chr. 12 | 23,603,191-23,603,428 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Triticum aestivum | Breakpoint Interval | 5AS3-0.75-0.98 | Wheat-EST-BI |
Triticum aestivum | Breakpoint Interval | 5BS6-0.81-1.00 | Wheat-EST-BI |
Triticum aestivum | Breakpoint Interval | 5DS2-0.78-1.00 | Wheat-EST-BI |
Oryza sativa | QTL | AQBC100 | qtl_marker |
Oryza sativa | QTL | AQBE037 | qtl_marker |
Oryza sativa | QTL | AQBE038 | qtl_marker |
Oryza sativa | QTL | AQBE039 | qtl_marker |
Oryza sativa | QTL | AQBE040 | qtl_marker |
Oryza sativa | QTL | AQBE041 | qtl_marker |
Oryza sativa | QTL | AQBE071 | qtl_marker |
Oryza sativa | QTL | AQBW001 | qtl_marker |
Oryza sativa | QTL | AQBW002 | qtl_marker |
Oryza sativa | QTL | AQCN014 | qtl_marker |
Oryza sativa | QTL | AQCN015 | qtl_marker |
Oryza sativa | QTL | AQCN029 | qtl_marker |
Oryza sativa | QTL | AQCN030 | qtl_marker |
Oryza sativa | QTL | AQDV030 | qtl_marker |
Oryza sativa | QTL | AQEA126 | qtl_marker |
Oryza sativa | QTL | AQEA127 | qtl_marker |
Oryza sativa | QTL | AQEA128 | qtl_marker |
Oryza sativa | QTL | AQEA129 | qtl_marker |
Oryza sativa | QTL | AQEA296 | qtl_marker |
Oryza sativa | QTL | AQEA297 | qtl_marker |
Oryza sativa | QTL | AQEA298 | qtl_marker |
Oryza sativa | QTL | AQEA299 | qtl_marker |
Oryza sativa | QTL | AQEA300 | qtl_marker |
Oryza sativa | QTL | AQEA301 | qtl_marker |
Oryza sativa | QTL | AQEA302 | qtl_marker |
Oryza sativa | QTL | AQEA303 | qtl_marker |
Oryza sativa | QTL | AQEA507 | qtl_marker |
Oryza sativa | QTL | AQEA509 | qtl_marker |
Oryza sativa | QTL | AQEA511 | qtl_marker |
Oryza sativa | QTL | AQEN010 | qtl_marker |
Oryza sativa | QTL | AQEN017 | qtl_marker |
Oryza sativa | QTL | AQF036 | qtl_marker |
Oryza sativa | QTL | AQF054 | qtl_marker |
Oryza sativa | QTL | AQF055 | qtl_marker |
Oryza sativa | QTL | AQF075 | qtl_marker |
Oryza sativa | QTL | AQF106 | qtl_marker |
Oryza sativa | QTL | AQF117 | qtl_marker |
Oryza sativa | QTL | AQFT017 | qtl_marker |
Hordeum vulgare | QTL | AQGZ039 | qtl_marker |
Hordeum vulgare | QTL | AQHD007 | qtl_marker |
Oryza sativa | QTL | AQHG006 | qtl_marker |
Oryza sativa | QTL | AQHG009 | qtl_marker |
Oryza sativa | QTL | AQHG013 | qtl_marker |
Oryza sativa | QTL | AQHG017 | qtl_marker |
Oryza sativa | QTL | AQHG020 | qtl_marker |
Oryza sativa | QTL | AQHH030 | qtl_marker |
Oryza sativa | QTL | AQHP047 | qtl_marker |
Oryza sativa | QTL | AQHP056 | qtl_marker |
Oryza sativa | QTL | AQHQ013 | qtl_marker |
Oryza sativa | QTL | AQHQ022 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 1.05 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 3.04 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 4.00 | bin_marker |
Oryza sativa | QTL | CQAH54 | qtl_marker |
Oryza sativa | QTL | CQJ15 | qtl_marker |
Oryza sativa | QTL | CQJ16 | qtl_marker |
Oryza sativa | QTL | CQAB80 | qtl_marker |
Oryza sativa | QTL | CQAB81 | qtl_marker |
Oryza sativa | QTL | CQAB82 | qtl_marker |
Oryza sativa | QTL | CQAB83 | qtl_marker |
Oryza sativa | QTL | CQAB84 | qtl_marker |
Oryza sativa | QTL | CQAB85 | qtl_marker |
Oryza sativa | QTL | CQAB86 | qtl_marker |
Oryza sativa | QTL | CQAI5 | qtl_marker |
Oryza sativa | QTL | DQE11 | qtl_marker |
Oryza sativa | QTL | DQE55 | qtl_marker |
Oryza sativa | QTL | DQE43 | qtl_marker |
Oryza sativa | QTL | CQAQ6 | qtl_marker |
Oryza sativa | QTL | CQK18 | qtl_marker |
Oryza sativa | QTL | CQK19 | qtl_marker |
Oryza sativa | QTL | CQAX11 | qtl_marker |
Oryza sativa | QTL | CQAW36 | qtl_marker |
Oryza sativa | QTL | CQAW37 | qtl_marker |
Avena sativa | Probed Site | cdo344a(rga) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo344b(rga) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo344c(rga) | maizegdb_to_gramene |
Avena sativa | EST | BE439129 | related_sequence |
Avena sativa | EST | AA231910 | related_sequence |
CDO344 BROWS Autorad: Survey blot of the probe CDO344 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO344 SL Autorad: Survey blot of the probe CDO344 for the BS125/2/BS125/WLO2 population |