![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Markers Home |
Markers Search |
Browse Map Sets |
SSR Markers Resource |
Microarray Probes |
Help |
Tutorial |
FAQs
Avena sativa RFLP "CDO412"
| ID | 4862 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | CDO412 (GRAINGENES PROBE) | ||||||||||||||||
| Synonyms (15) |
|
||||||||||||||||
| MAIZEGDB PROBE | p-cdo412 | ||||||||||||||||
| Type | RFLP | ||||||||||||||||
| Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||||||||
| Germplasm | |||||||||||||||||
| Description | Plasmids from the Paterson lab | ||||||||||||||||
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | CDO412 |
| DNA Treatment | |
| Source Type | |
| Source Tissue | |
| Source Treatment | |
| Vector | |
| Vector Antibiotic Resistance | |
| Fragment Size | |
| Vector Excision Enzyme | |
| Vector Primers | |
| Overgo1 | |
| Overgo2 |
Database Cross-References (0)
Sequences (1)
Related Sequence (1)
GCCAAATCAGCCTGTGGCATTGGCACCAACCAGTGATTTCTATAGTGGCATCCCAAAGAGGCCTTCCCATTTTATGCTAC
AAACTGTCAATAAGTTTGAGAAGTATCTTGGTGAGTGCTGCAAGTGGATTGCTGAGCTAGAGCAGCTGGTTCAAATTGAG
ACCAGTAAAAGATCTACAACTTCTGTGGAATCTCTTCCAAAAGTTATGTCCAATGTGCATGACTATNTCATCTATGTTGC
TTCAAAGGTGGAAAATCTTCATCAGTATGTTGTGACATTGAAAACTGAATATCTNNCATGGTCAGCGCCCGTCTGGGTAA
Map Positions (44)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell Diploid 1995 | BNL6.32 | E | 94.7-94.7 cM | View Comparative Map | |||
|
||||||||
| Oat, KxO, 2003 | BNL6.32 | 16_23 | 31.5-31.5 cM | View Comparative Map | ||||
|
||||||||
| BNL6.32 | 25 | 13-13 cM | View Comparative Map | |||||
|
||||||||
| QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 25 | 2.7-2.7 cM | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Composite 2004 | BNL6.32 | 5A | 35-35 cM | View Comparative Map | |||
|
||||||||
| BNL6.32 | 5B | 56-56 cM | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 5D | 33-33 cM | View Comparative Map | |||||
|
||||||||
| Cornell Synthetic/Opata 1995 | BNL6.32 | 5A | 27.2-27.2 cM | View Comparative Map | ||||
|
||||||||
| BNL6.32 | 5B | 36.8-36.8 cM | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 5D | 32.5-32.5 cM | View Comparative Map | |||||
|
||||||||
| QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 5A | 27.2-27.2 cM | View Comparative Map | |||
|
||||||||
| BNL6.32 | 5B | 36.8-36.8 cM | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 5D | 32.5-32.5 cM | View Comparative Map | |||||
|
||||||||
| Wheat composite QTL 2004 | BNL6.32 | 5A | 35-35 cM | View Comparative Map | ||||
|
||||||||
| BNL6.32 | 5B | 56-56 cM | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 5D | 33-33 cM | View Comparative Map | |||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 9a | 37-37 cM | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | FPC Chr OC__B Dec 2006 | BNL6.32 | 3 | 51,117,571-51,117,571 bp | View Comparative Map | |||
|
||||||||
| BNL6.32 | 6 | 9,835,081-9,835,081 bp | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 7 | 34,149,721-34,149,721 bp | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 9 | 26,356,441-26,356,441 bp | View Comparative Map | |||||
|
||||||||
| BNL6.32 | 9 | 27,422,851-27,422,851 bp | View Comparative Map | |||||
|
||||||||
| FPC OC__B Dec 2006 | BNL6.32 | ctg333 | 332-332 bands | View Comparative Map | ||||
|
||||||||
| BNL6.32 | ctg578 | 292-292 bands | View Comparative Map | |||||
|
||||||||
| BNL6.32 | ctg685 | 1,666-1,666 bands | View Comparative Map | |||||
|
||||||||
| BNL6.32 | ctg823 | 628-628 bands | View Comparative Map | |||||
|
||||||||
| BNL6.32 | ctg824 | 442-442 bands | View Comparative Map | |||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OG_BB Feb 2006 | BNL6.32 | 3 | 30,396,251-30,396,251 bp | View Comparative Map | |||
|
||||||||
| BNL6.32 | 9 | 15,531,251-15,531,251 bp | View Comparative Map | |||||
|
||||||||
| Curated FPC OG_BB Feb 2006 | BNL6.32 | ctg120 | 256-256 bands | View Comparative Map | ||||
|
||||||||
| BNL6.32 | ctg47 | 545-545 bands | View Comparative Map | |||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 1994 | BNL6.32 | 9 | 47.9-47.9 cM | View Comparative Map | |||
|
||||||||
| Cornell RFLP 2001 | BNL6.32 | 9 | 61.9-61.9 cM | View Comparative Map | ||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Paterson 2003 | BNL6.32 | B | 57.7-57.7 cM | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell Wilson 1999 | BNL6.32 | 2 | 145.1-145.1 cM | View Comparative Map | |||
|
||||||||
| BNL6.32 | 7 | 64.3-64.3 cM | View Comparative Map | |||||
|
||||||||
| IBM 2002 | BNL6.32 | 7 | 239-239 cM | View Comparative Map | ||||
|
||||||||
| SSR IBM 2001 | BNL6.32 | 7 | 185.6-185.6 cM | View Comparative Map | ||||
|
||||||||
| UMC 1998 | BNL6.32 | 7 | 64.1-64.1 cM | View Comparative Map | ||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OR_BB Feb 2006 | BNL6.32 | 3 | 43,194,361-43,194,361 bp | View Comparative Map | |||
|
||||||||
| BNL6.32 | 9 | 20,919,361-20,919,361 bp | View Comparative Map | |||||
|
||||||||
| Curated FPC OR_BB Feb 2006 | BNL6.32 | ctg157 | 473-473 bands | View Comparative Map | ||||
|
||||||||
| BNL6.32 | ctg45 | 2,198-2,198 bands | View Comparative Map | |||||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 17,009,248-17,009,789 bp | View Comparative Map | |||
|
||||||||
Associations (73)
Associated Ontologies (0)
Images (1)
 |
