ID | 4763 | ||||||
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Name | CDO17 (GRAINGENES PROBE) | ||||||
Synonyms (6) |
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MAIZEGDB PROBE | p-cdo17 | ||||||
Type | RFLP | ||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||
Germplasm | |||||||
Description | |||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO17 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0101 |
Overgo2 |
GTCTTCTTGTGGGTGCTCTACTACCTCATCACTGTCGAGGGCGGCGGGGCGACAGAACAGGTCATTGACCTGTTACCAGT
GTCCAAACAAGTGAAGGAGCGCTGCGTTGAGGTCATAAACCATGCCATTAGTAGTGTCTTGTTAGCCACTGCCAAGATTG
CTATATTCCAGGGATGCCTGACATGGCTGTTGCTCAAGTTCTTCAAGGTGCATTTTGTGTACACATCAACTATCCTCACA
GTCATCAGCGCACTGTTTCCAATACTACCAGCATGGCTATCCTCGATATTC
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | D | 30.2-30.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 7A | 107-107 cM | View Comparative Map | |||
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BNL6.32 | 7B | 47-47 cM | View Comparative Map | |||||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 7A | 118.8-118.8 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 7A | 118.8-118.8 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 7A | 47-47 cM | View Comparative Map | ||||
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BNL6.32 | 7A | 107-107 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 6 | 11-11 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | IGCN 1998 | BNL6.32 | 6 | 77.2-77.2 cM | View Comparative Map | |||
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QTL | CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 6 | 89.1-89.1 cM | View Comparative Map | |||
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CNYU Naj11/Bal DH QTL 1999 | BNL6.32 | 6 | 51.7-51.7 cM | View Comparative Map | ||||
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IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 6 | 77.2-77.2 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 6 | 65.1-65.1 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 6 | 54.4-54.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-10 | 70-70 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 10 | 55.5-55.5 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | I | 54.7-54.7 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 9 | 58-58 cM | View Comparative Map | |||
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UMC 1998 | BNL6.32 | 9 | 67.7-67.7 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 11,040,518-11,040,807 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQDK005 | qtl_marker |
Oryza sativa | QTL | AQDK013 | qtl_marker |
Zizania palustris | QTL | AQK010 | qtl_marker |
Oryza sativa | QTL | AQP002 | qtl_marker |
Oryza sativa | QTL | AQP005 | qtl_marker |
Oryza sativa | QTL | AQP012 | qtl_marker |
Oryza sativa | QTL | AQP015 | qtl_marker |
Oryza sativa | QTL | AQP019 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 9.03 | bin_marker |
Sorghum propinquum | FISH Probe | spb-9.03_L03 (cdo17) | hybridisation |
Oryza sativa | QTL | CQB19 | qtl_marker |
Oryza sativa | QTL | CQB21 | qtl_marker |
Oryza sativa | QTL | CQB20 | qtl_marker |
Oryza sativa | QTL | CQB42 | qtl_marker |
Oryza sativa | QTL | CQB43 | qtl_marker |
Avena sativa | EST | AA231638 | related_sequence |
CDO17 BROWS Autorad: Survey blot of the probe CDO17 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO17 SL Autorad: Survey blot of the probe CDO17 for the BS125/2/BS125/WLO2 population |