ID | 4686 | ||||||||||||
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Name | CDO534 (GRAINGENES PROBE) | ||||||||||||
Synonyms (11) |
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MAIZEGDB PROBE | p-cdo534 | ||||||||||||
Type | RFLP | ||||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||||
Germplasm | |||||||||||||
Description | |||||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO534 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | B | 62.4-62.4 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 36 | 17.6-17.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 6D | 83-83 cM | View Comparative Map | |||
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BNL6.32 | 6D | 107-107 cM | View Comparative Map | |||||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 6D | -4.8--4.8 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 6D | -4.8--4.8 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 6D | 83-83 cM | View Comparative Map | ||||
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BNL6.32 | 6D | 107-107 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 9a | 145-145 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 11 | 69.9-69.9 cM | View Comparative Map | |||
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Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 11 | 25-25 cM | View Comparative Map | ||||
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Cornell V20A/Oruf QTL 1998 | BNL6.32 | 11 | 84.4-84.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 2 | 29.3-29.3 cM | View Comparative Map | |||
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BNL6.32 | 11 | 90.3-90.3 cM | View Comparative Map | |||||
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Cornell RFLP 2001 | BNL6.32 | 2 | 32.8-32.8 cM | View Comparative Map | ||||
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BNL6.32 | 11 | 90-90 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Huazhong RFLP 1997 | BNL6.32 | 11 | 86.8-86.8 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 4 | 160.4-160.4 cM | View Comparative Map | |||
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BNL6.32 | 5 | 141.1-141.1 cM | View Comparative Map | |||||
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IBM 2002 | BNL6.32 | 4 | 577.6-577.6 cM | View Comparative Map | ||||
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UMC 1998 | BNL6.32 | 4 | 139.4-139.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 5,243,056-5,243,162 bp | View Comparative Map | |||
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BNL6.32 | Chr. 2 | 5,243,642-5,244,235 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 11 | 19,188,772-19,189,178 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 11 | 19,189,072-19,189,178 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 11 | 19,189,108-19,189,294 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQAB064 | qtl_marker |
Oryza sativa | QTL | AQAE012 | qtl_marker |
Oryza sativa | QTL | AQAI025 | qtl_marker |
Oryza sativa | QTL | AQCY019 | qtl_marker |
Oryza sativa | QTL | AQGI018 | qtl_marker |
Oryza sativa | QTL | AQGI087 | qtl_marker |
Oryza sativa | QTL | AQGI093 | qtl_marker |
Oryza sativa | QTL | AQGI209 | qtl_marker |
Oryza sativa | QTL | AQGI271 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 4.09 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.04 | bin_marker |
Oryza sativa | QTL | CQAS132 | qtl_marker |
Oryza sativa | QTL | CQAS143 | qtl_marker |
Oryza sativa | QTL | CQAS134 | qtl_marker |
Oryza sativa | QTL | CQAS133 | qtl_marker |
Oryza sativa | QTL | CQAS137 | qtl_marker |
Avena sativa | Probed Site | cdo534a(cts) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo534c(cts) | maizegdb_to_gramene |
Avena sativa | EST | AA231705 | related_sequence |
Avena sativa | EST | AA231712 | related_sequence |
Avena sativa | EST | BE439046 | related_sequence |
Avena sativa | EST | BE439090 | related_sequence |
CDO534 SL Autorad: Survey blot of the probe CDO534 for the BS125/2/BS125/WLO2 population |