ID | 4631 | ||||||||||
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Name | CDO580 (GRAINGENES PROBE) | ||||||||||
Synonyms (10) |
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MAIZEGDB PROBE | p-cdo580 | ||||||||||
Type | RFLP | ||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||
Germplasm | |||||||||||
Description | |||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO580 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.3 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0118 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | A | 46.9-46.9 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 4_12 | 34.5-34.5 cM | View Comparative Map | ||||
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QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 4 | 40.3-40.3 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Barley consensus - 1995 | BNL6.32 | 1H | 5.8-5.8 cM | View Comparative Map | |||
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Barley consensus 2003 | BNL6.32 | 1H | 34.9-34.9 cM | View Comparative Map | ||||
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BNL6.32 | 6H | 67.2-67.2 cM | View Comparative Map | |||||
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QTL | UMN Fred/Stan QTL 2003 | BNL6.32 | 1H | 41-41 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 1A | 43-43 cM | View Comparative Map | |||
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BNL6.32 | 1D | 53-53 cM | View Comparative Map | |||||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 1A | 46.3-46.3 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 1A | 46.3-46.3 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 1R | 43-43 cM | View Comparative Map | ||||
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BNL6.32 | 1R | 53-53 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 2 | 131-131 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Cornell V20A/glab QTL 2004 | BNL6.32 | 5 | 15.6-15.6 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 13.5-13.5 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 5 | 23.9-23.9 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Huazhong RFLP 1997 | BNL6.32 | 5 | 12.3-12.3 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 6 | 6.9-6.9 cM | View Comparative Map | |||
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BNL6.32 | 8 | 84.3-84.3 cM | View Comparative Map | |||||
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Cornell Wilson 1999 | BNL6.32 | 6 | 18.4-18.4 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 98.2-98.2 cM | View Comparative Map | |||||
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UMC 1998 | BNL6.32 | 6 | 26.8-26.8 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-09 | 23.5-23.5 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 9 | 65.2-65.2 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | G | 73.1-73.1 cM | View Comparative Map | ||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 9 | 27.5-27.5 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 1,470,219-1,470,343 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 1,472,214-1,472,788 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 5 | 1,472,217-1,473,076 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Avena sativa | QTL | AQDF297 | qtl_marker |
Avena sativa | QTL | AQDF302 | qtl_marker |
Hordeum vulgare | QTL | AQFH001 | qtl_marker |
Hordeum vulgare | QTL | AQFH002 | qtl_marker |
Sorghum bicolor | QTL | AQGN058 | qtl_marker |
Sorghum bicolor | QTL | AQGN059 | qtl_marker |
Sorghum bicolor | QTL | AQHL024 | qtl_marker |
Sorghum bicolor | QTL | AQHL026 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 6.01 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.05 | bin_marker |
Avena sativa | Probed Site | cdo580a(ivd) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo580b(ivd) | maizegdb_to_gramene |
Avena sativa | EST | AA231888 | related_sequence |
Avena sativa | EST | BE439190 | related_sequence |
Avena sativa | EST | AA231714 | related_sequence |
CDO580 SL Autorad: Survey blot of the probe CDO580 for the BS125/2/BS125/WLO2 population |