ID | 17682 |
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Name | RG480 |
Synonyms (0) | None. |
Type | RFLP |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RG480 |
DNA Treatment | PstI-digested |
Source Type | Genomic |
Source Tissue | leaf |
Source Treatment | |
Vector | pGEM4Z |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.5 |
Vector Excision Enzyme | PstI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
Gramene Literature | McCouch-S-R, Kochert-G, Yu-Z-H, Wang-Z-Y, Khush-G-S, Coffman-W-R, Tanksley-S-D, "Molecular mapping of rice chromosomes", Theoretical and applied genetics, 1988, vol. 76, pp. 815-829 |
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Gramene Diversity Rice Marker | 328 |
GCCTGCAGTTGTAAGCAAGCCACAGGTTGATGTTGGTGGCAATGACATGAGGGTTTCCTACACACTGGTAAGCTAGGTGG
TTTTAAGATATAGCTATCAAAGGGAACAATATATGTCAATCCTATTGTTTCTTTTATAACTAATATTACAATCTCTATTG
GTAGGATTTTTTAAAAGTTCTTTTGGGAGAAATTTCTAGTCTATTCTATTAAGTTTTATGAAGAATACTTACTAGCAAAA
TACAACCTACCTGCATGACAACCCGTTTACCTTCACCTAAAAAAGGTATTGGTGGATCCAGATGCCCCAAGCCCAAGTGA
CCCATCGCTGAGGGAGTACTTGCACTGGTAAACCAATCACAACATATTGCAGCTATGACCAACTATGGCAAATTACACCA
TTCTTTTTTTGACCCATGCATTTGACTTTTGATATATATATATATATATACATATATTTTTAAGCCTGCTCNCGTATTTA
TGTGCACTGNACTTTTTGGAGGTGGNNACAGTATCCCTGAACAACTCCATCAGCTTGGGATGNTGNGTTNNTNNAAGGGN
TGTTGNTGNGGTTCCTTTTNGGAATTTGCCCGGGAGGNAGGNGC
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 25,606,170-25,606,669 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 5 | 38.6-38.6 cM | View Comparative Map | |||
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CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 5 | 152.4-152.4 cM | View Comparative Map | ||||
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CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 5 | 125.7-125.7 cM | View Comparative Map | ||||
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Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 5 | 88.9-88.9 cM | View Comparative Map | ||||
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Cornell V20A/glab QTL 2004 | BNL6.32 | 5 | 116-116 cM | View Comparative Map | ||||
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JNIG W1944/Peik QTL 2002 | BNL6.32 | 5 | 163.9-163.9 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 110.2-110.2 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 5 | 102.1-102.1 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQCF007 | qtl_marker |
Oryza sativa | QTL | AQCF018 | qtl_marker |
Oryza sativa | QTL | AQCF032 | qtl_marker |
Oryza sativa | QTL | AQCF033 | qtl_marker |
Oryza sativa | QTL | AQCF034 | qtl_marker |
Oryza sativa | QTL | AQCO006 | qtl_marker |
Oryza sativa | QTL | AQCO070 | qtl_marker |
Oryza sativa | QTL | AQCO072 | qtl_marker |
Oryza sativa | QTL | AQCO121 | qtl_marker |
Oryza sativa | QTL | AQCP006 | qtl_marker |
Oryza sativa | QTL | AQCP070 | qtl_marker |
Oryza sativa | QTL | AQCP072 | qtl_marker |
Oryza sativa | QTL | AQEJ075 | qtl_marker |
Oryza sativa | QTL | AQEJ077 | qtl_marker |
Oryza sativa | QTL | AQF064 | qtl_marker |
Oryza sativa | QTL | AQF139 | qtl_marker |
Oryza sativa | QTL | AQF148 | qtl_marker |
Oryza sativa | QTL | CQAS53 | qtl_marker |
Oryza sativa | QTL | CQAS54 | qtl_marker |
Oryza sativa | QTL | CQAS56 | qtl_marker |
Oryza sativa | QTL | CQAS57 | qtl_marker |
Oryza sativa | QTL | CQAS59 | qtl_marker |
Oryza sativa | QTL | CQAS62 | qtl_marker |
Oryza sativa | QTL | CQAS63 | qtl_marker |
Oryza sativa Indica Group | GSS | AQ074132 | related_sequence |
RG480 SL Autorad: Survey blot of the probe RG480 for the BS125/2/BS125/WLO2 population |