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Oryza sativa RFLP "RZ740"
| ID | 16844 | ||||||
|---|---|---|---|---|---|---|---|
| Name | RZ740 | ||||||
| Synonyms (5) |
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| Deprecated Gramene Marker Acc | 48587483 | ||||||
| MAIZEGDB PROBE | p-rz740 | ||||||
| Type | RFLP | ||||||
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||
| Germplasm | |||||||
| Description | Plasmids from the Paterson lab | ||||||
| Tags () | None |
Source/Library
Details
| Marker Created: | |
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| Marker Updated: | |
| Internal Marker Accession: | RZ740 |
| DNA Treatment | |
| Source Type | |
| Source Tissue | |
| Source Treatment | |
| Vector | |
| Vector Antibiotic Resistance | |
| Fragment Size | |
| Vector Excision Enzyme | |
| Vector Primers | |
| Overgo1 | |
| Overgo2 |
Sequences (3)
Related Sequences (3)
Align All Sequences
Map Positions (41)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 24,732,111-24,732,326 bp | View Comparative Map | |||
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| BNL6.32 | Chr. 4 | 24,732,738-24,732,978 bp | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OG_BB Feb 2006 | BNL6.32 | 2 | 23,175,001-23,175,001 bp | View Comparative Map | |||
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| BNL6.32 | 4 | 21,231,251-21,231,251 bp | View Comparative Map | |||||
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| BNL6.32 | 9 | 13,975,001-13,975,001 bp | View Comparative Map | |||||
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| Curated FPC OG_BB Feb 2006 | BNL6.32 | ctg119 | 1,160-1,160 bands | View Comparative Map | ||||
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| BNL6.32 | ctg30 | 1,326-1,326 bands | View Comparative Map | |||||
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| BNL6.32 | ctg57 | 313-313 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OR_CB Feb 2006 | BNL6.32 | 2 | 32,904,901-32,904,901 bp | View Comparative Map | |||
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| BNL6.32 | 4 | 27,815,761-27,815,761 bp | View Comparative Map | |||||
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| Curated FPC OR_CB Feb 2006 | BNL6.32 | ctg42 | 1,444-1,444 bands | View Comparative Map | ||||
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| BNL6.32 | ctg92 | 2,185-2,185 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | KRGRP 1998 | BNL6.32 | 4 | 75.4-75.4 cM | View Comparative Map | |||
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| QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 80.4-80.4 cM | View Comparative Map | |||
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| Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 4 | 38.7-38.7 cM | View Comparative Map | ||||
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| Cornell V20A/Oruf QTL 1998 | BNL6.32 | 4 | 46.9-46.9 cM | View Comparative Map | ||||
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| IRRI Mor/CO39 QTL 1994 | BNL6.32 | 4 | 26.7-26.7 cM | View Comparative Map | ||||
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| KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 4 | 75.4-75.4 cM | View Comparative Map | ||||
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| UCD Lab/Bla QTL 1998 | BNL6.32 | 4 | 96-96 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OR_BB Feb 2006 | BNL6.32 | 4 | 28,679,641-28,679,641 bp | View Comparative Map | |||
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| Curated FPC OR_BB Feb 2006 | BNL6.32 | ctg58 | 1,245-1,245 bands | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | FPC Chr OC__B Dec 2006 | BNL6.32 | 2 | 52,041,301-52,041,301 bp | View Comparative Map | |||
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| BNL6.32 | 4 | 36,201,361-36,201,361 bp | View Comparative Map | |||||
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| BNL6.32 | 4 | 36,688,441-36,688,441 bp | View Comparative Map | |||||
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| BNL6.32 | 4 | 38,561,731-38,561,731 bp | View Comparative Map | |||||
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| BNL6.32 | 7 | 29,382,241-29,382,241 bp | View Comparative Map | |||||
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| BNL6.32 | 8 | 19,245,811-19,245,811 bp | View Comparative Map | |||||
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| BNL6.32 | UNKNOWN | 8,536,201-8,536,201 bp | View Comparative Map | |||||
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| FPC OC__B Dec 2006 | BNL6.32 | ctg1065 | 63-63 bands | View Comparative Map | ||||
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| BNL6.32 | ctg216 | 77-77 bands | View Comparative Map | |||||
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| BNL6.32 | ctg429 | 276-276 bands | View Comparative Map | |||||
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| BNL6.32 | ctg430 | 352-352 bands | View Comparative Map | |||||
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| BNL6.32 | ctg432 | 523-523 bands | View Comparative Map | |||||
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| BNL6.32 | ctg677 | 1,774-1,774 bands | View Comparative Map | |||||
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| BNL6.32 | ctg741 | 1,233-1,233 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Paterson 2003 | BNL6.32 | D | 41.6-41.6 cM | View Comparative Map | |||
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| BNL6.32 | F | 74.7-74.7 cM | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | UMC 1998 | BNL6.32 | 10 | 79.4-79.4 cM | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 1994 | BNL6.32 | 4 | 59.8-59.8 cM | View Comparative Map | |||
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| Cornell RFLP 2001 | BNL6.32 | 4 | 54.7-54.7 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Huazhong RFLP 1997 | BNL6.32 | 4 | 73.3-73.3 cM | View Comparative Map | |||
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Associations (18)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza nivara | Clone | a0054M06 | hybridisation |
| Oryza sativa | QTL | AQEO011 | qtl_marker |
| Oryza sativa | QTL | AQEO021 | qtl_marker |
| Oryza sativa | QTL | AQFE015 | qtl_marker |
| Oryza sativa | QTL | AQFE031 | qtl_marker |
| Oryza sativa | QTL | AQFE059 | qtl_marker |
| Oryza sativa | QTL | AQFE060 | qtl_marker |
| Oryza sativa | QTL | AQFE061 | qtl_marker |
| Oryza sativa | QTL | AQFE110 | qtl_marker |
| Zea mays subsp. mays | Maize Bin | Bin 10.04 | bin_marker |
| Oryza sativa | QTL | CQAW12 | qtl_marker |
| Oryza sativa | QTL | CQAW13 | qtl_marker |
| Oryza sativa | QTL | CQAW14 | qtl_marker |
| Oryza sativa | QTL | CQAX5 | qtl_marker |
| Oryza sativa | Probed Site | rz740(sam) | maizegdb_to_gramene |
| Oryza sativa Indica Group | EST | AA231807 | related_sequence |
| Oryza sativa Indica Group | EST | AA231818 | contained_in_sequence |
| Oryza sativa Indica Group | EST | AA231818 | related_sequence |
Associated Ontologies (0)
Images (1)
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RZ740 SL Autorad: Survey blot of the probe RZ740 for the BS125/2/BS125/WLO2 population |
