ID | 11429 |
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Name | RM404 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM404 |
Repeat Motif | (GA)33 |
Anneal Temperature | 55 |
Expected PCR Product Size | 236 |
Sequence Source | AQ156191 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 15,438,081-15,438,317 bp | View Comparative Map | |||
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BNL6.32 | Chr. 8 | 15,438,155-15,438,317 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 8 | 60.9-69 cM | View Comparative Map | |||
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QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 8 | 45.1-45.1 cM | View Comparative Map | |||
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CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 8 | 46.7-46.7 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 8 | 69-69 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 8 | 58.5-58.5 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQA009 | qtl_marker |
Oryza sativa | QTL | AQA014 | qtl_marker |
Oryza sativa | QTL | AQED011 | qtl_marker |
Oryza sativa | QTL | AQED051 | qtl_marker |
Oryza sativa | QTL | AQG004 | qtl_marker |
Oryza sativa | QTL | AQGH004 | qtl_marker |
Oryza sativa | QTL | AQGH017 | qtl_marker |
Oryza sativa | QTL | AQGH021 | qtl_marker |
Oryza sativa | QTL | AQGH034 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT22914 | equivalent_to |
Oryza sativa | QTL | CQAP1 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM404_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM404_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ156191 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ156191 | source_sequence |