ID | 11082 |
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Name | RM529 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM529 |
Repeat Motif | (CT)12 |
Anneal Temperature | 55 |
Expected PCR Product Size | 273 |
Sequence Source | AQ840615 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,670,383-40,670,655 bp | View Comparative Map | |||
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BNL6.32 | Chr. 1 | 40,670,518-40,670,766 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 1 | 189.6-189.6 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 1 | 161.5-161.5 cM | View Comparative Map | ||||
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QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 189.6-189.6 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 1 | 161.5-161.5 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQA006 | qtl_marker |
Oryza sativa | QTL | AQB002 | qtl_marker |
Oryza sativa | QTL | AQB009 | qtl_marker |
Oryza sativa | QTL | AQG001 | qtl_marker |
Oryza sativa | QTL | AQG005 | qtl_marker |
Oryza sativa | QTL | AQG007 | qtl_marker |
Oryza sativa | QTL | AQG009 | qtl_marker |
Oryza sativa | QTL | AQG015 | qtl_marker |
Oryza sativa | QTL | AQG017 | qtl_marker |
Oryza sativa | QTL | AQG019 | qtl_marker |
Oryza sativa | QTL | AQJ002 | qtl_marker |
Oryza sativa | QTL | AQJ004 | qtl_marker |
Oryza sativa | QTL | AQJ008 | qtl_marker |
Oryza sativa | QTL | AQJ011 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT12143 | equivalent_to |
Oryza sativa | QTL | CQAE6 | qtl_marker |
Oryza sativa | QTL | EQC0004 | qtl_marker |
Oryza sativa | QTL | EQC0005 | qtl_marker |
Oryza sativa | QTL | EQC0006 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM529_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM529_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ840615 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ840615 | source_sequence |