ID | 11075 |
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Name | RM226 |
Synonyms (1) | OSR3 |
Type | SSR |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM226 |
Repeat Motif | (AT)38 |
Anneal Temperature | 55 |
Expected PCR Product Size | 274 |
Sequence Source | |
Linkage Group | |
Remarks |
Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
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Gramene Diversity Rice Marker | 308 |
TCTTGGAGCTCAAAGGCTCAAAGCTCAGCCACATACAGCCAGGCGAAAAAAAAAATCGAAAACTTGTCAAATATCTGTAG
CAATAACCAATGATATCTCTACTAGTCATCTCAGCGGCCGGTGGCACGCGAACCGGAGTTATATCAAACAAACACCACCG
ACGTTGCCATCGTCACGGTACCAGACTCCTGCGTTCCACCACTCCACCAGTGACCGTGACGTGATACATGGAGATAACGC
CGCCTGGCAACTGGCGAGATAATTAAAGAAACCGGGAAACACTGGTTCCAACCGCTCGCTCGGCTCGGTTCCAATTTCCA
AACGTGTCGCCCATTCTACACCGTCTCCATCCATCTCATCTCGTCGTCTTCCCCCCCGCGAGTCCGCGACCCCCCGCGCT
ATAAAATCCAAGGCCGCGATCGAGATGCGGAAATATCGAGTCGCCGGATTGGTAGCCGCCCTGCTCGTGCTGCATTCGCT
AGCCACGCCGTCCGCTCAGGCCGAGGCGCATCGCGCAGGGGGAGAAGGGGAGGAGAAGATGTCGAGCGACGGAGGGCCGG
TGCTTGGCGGCGTCGAGCCGGTGGGGAACGAGAACGACCTCCACCTCGTCGACCTCGCCCGCTTCGCCGTCACCGAGCAC
AACAAGAAGGCCGTAAGCGCCCCGCTCTACCCTCCTCCCTACTTCTCCTCTTCGCAAGGCCGGTCGTCCAACTAGATCTG
TGTTCTATGGACTAATTATGCAACGCATGACACACGGCTCTATTTAATTTTTAAATTGATTCTCGCCAAGGAAGTAATTT
TGATTCCTAGTCATGTAAACCTGCTCGAGTCGGTGAGAAAAAAAAAGATGCGGTGTTGCGTATGTTTGTTAAAAGTGCAA
TTAGGCAATTTTTTGTGTTCAAAGATTGTGCTGTGTTCTCTTTTATGACAATATGGAACAGGAGGTTCTGGACTGATTAG
CATTTAATCTTGATACTACCATGCGCAGAATTCTCTGCTGGAGTTCGAGAAGCTTGTGAGTGTGAAGCAGCAAGTTGTCG
CTGGCACTTTGTACTATTTCACAATTGAGGTGAAGGAAGGGGATGCCAAGAAGCTCTATGAAGCTAAGGTCTGGGAGAAA
CCATGGATGGACTTCAAGGAGCTCCAGGAGTTCAAGCCTGTCGATGCCAGTGCAAATGCCTAAGGTCTAGACATGTTTGG
TTTAGATACCCGCCAAACAAAATTTTCACCTGTTCCATGCATTGACCATGTATAATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATGTCCTTTTCTCATTAGAAAACCAGAGCTTG
TGCCCCATCCTACTTGGTTAAGGCCATTGATGAATATGTTTGTTATTCTCTTAGTAAGAATACACTTTTAAGTTTTTCGA
TCAAATAATTAAGATATTCAACTTTCTAAATAAACCTTTTTTCTTTTCTCTAGATATTATATCACTGAATCATTTATTGC
ATATTGAATTGACATGTCAAATCTACTAATTTCAGGCCCATCTCGTATCCTATGTGTATCAAGTTATCAAGAAGATGGGG
AATAATATGGTGTGGATATAGCTATTGGACATGTTAATTATCCACATGATAATATGGCTTGGATATAAGGATCTCACACG
AATAATATGGCTTGGATATATAGCTATTAAAGATTTTACCTATGGCATATTTCAATGTGTATTAGTACTAAGTAAGAATG
ATTGCAAGGTGTATTAACTACAAATATTGCAATAAAAGTCCCTGTTACTACACTTACAGTATTTTAAGTAGTCCTTGACT
GGATAGACTCTGTAATCATGTCACGTGCCTGTTGACTGTAGTTGATTGTACAGACGTATCATGTCAGCTACGTTAATGCT
ATATATTACTACGGCGA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,032,918-34,033,206 bp | View Comparative Map | |||
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BNL6.32 | Chr. 1 | 34,032,920-34,033,193 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 1 | 154.8-154.8 cM | View Comparative Map | |||
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IGCN 1998 | BNL6.32 | 4 | 66.4-66.4 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 1 | 136.9-136.9 cM | View Comparative Map | ||||
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KRGRP 1998 | BNL6.32 | 4 | 80-80 cM | View Comparative Map | ||||
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QTL | CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 4 | 25.2-25.2 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 154.8-154.8 cM | View Comparative Map | ||||
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IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 4 | 66.4-66.4 cM | View Comparative Map | ||||
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IGCN ZYQ8/JX17 RI QTL 2001 | BNL6.32 | 4 | 0-43.3 cM | View Comparative Map | ||||
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INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 1 | 191.8-191.8 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 1 | 208.9-208.9 cM | View Comparative Map | ||||
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JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 1b | 88.3-88.3 cM | View Comparative Map | ||||
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KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 4 | 80-80 cM | View Comparative Map | ||||
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LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 1 | 37.8-37.8 cM | View Comparative Map | ||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 4 | 56.2-56.2 cM | View Comparative Map | ||||
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MU CT9993/IR6226 QTL 2004 | BNL6.32 | 4 | 78.7-78.7 cM | View Comparative Map | ||||
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