ID | 10882 |
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Name | RM542 |
Synonyms (1) | APO03807.001 |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM542 |
Repeat Motif | (CT)22 |
Anneal Temperature | 55 |
Expected PCR Product Size | 113 |
Sequence Source | |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 12,712,017-12,712,178 bp | View Comparative Map | |||
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BNL6.32 | Chr. 7 | 12,712,017-12,712,189 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 7 | 12,712,074-12,712,187 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | CIAT SSR 2006 | BNL6.32 | 7 | 61.1-61.1 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 7 | 34.7-34.7 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 7 | 49.7-49.7 cM | View Comparative Map | ||||
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QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 7 | 1.9-1.9 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 7 | 34.7-34.7 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 7 | 49.7-49.7 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQA024 | qtl_marker |
Oryza sativa | QTL | AQA026 | qtl_marker |
Oryza sativa | QTL | AQA047 | qtl_marker |
Oryza sativa | QTL | AQGA012 | qtl_marker |
Oryza sativa | QTL | AQGA021 | qtl_marker |
Oryza sativa | QTL | AQGP056 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT21421 | equivalent_to |
Oryza sativa | QTL | EQC0024 | qtl_marker |
Oryza sativa | QTL | EQC0025 | qtl_marker |
Oryza sativa | QTL | EQC0026 | qtl_marker |
Oryza sativa | QTL | EQC0027 | qtl_marker |
Oryza sativa | QTL | EQC0028 | qtl_marker |
Oryza sativa | QTL | EQC0029 | qtl_marker |
Oryza sativa | QTL | EQC0031 | qtl_marker |
Oryza sativa Japonica Group | SSR | MRG2832.HAU2832 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM542_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM542_reverse | primer_reverse |