Zea mays mRNA "AY103778"

783046

Name

AY103778 (GenBank Accession {description

)

Synonyms (2)

pco063180a

pco063180b

GenBank GI {description

187950278

GenBank GI {description

21206856

GenBank Version {description

AY103778.1

GenBank Version {description

MaizeGDB cDNA - EST

MAIZEGDB EST

Type

Species

Zea mays (Maize) [ GR_tax:014450 ]

Germplasm

Description

Zea mays PCO063180 mRNA sequence.

Tags ()

None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	AY103778
Date Created
Date Updated
Ec Number
Allele
Bound Moiety
Cell Line
Cell Type
Chromosome
Citation
Clone
Clone Lib	Maize Mapping Project/DuPont Cornsensus Library
Codon Start
Comment	On May 12, 2008 this sequence version replaced gi:21206856. If you are interested in getting corresponding physical clones, these are publicly available from ZmDB and may be found by BLAST searching at MSL, maizemap.org; ZmDB, www.zmdb.iastate.edu; TIGR, www.tigr.org; or NCBI, www.ncbi.nlm.nih.gov. When the source of the maize cDNA sequences is either Virginia Walbot, Stanford or Pat Schnable, Iowa State, then clones may be requested from ZmDB: www.zmdb.iastate.edu.
Compare
Cons Splice
Country
Dev Stage
Ecotype
Evidence
Exception
Function
Gene
Germline
Haplotype
Insertion Seq
Isolate
Isolation Source
Keyword	HTC
Lab Host
Label
Locus Tag
Macronuclear
Map
Mod Base
Mol Type	mRNA
Note	this sequence is part of a project of EST assemblies resulting from the application of public contigs to seed DuPont contigs; this resource was assembled by DuPont as part of a collaboration for the overgo addressing of BACs in conjunction with the Maize Mapping Project
Number
Origin
Phenotype
Plasmid
Pop Variant
Product
Protein Id
Pseudo
Rearranged
Ref Authors	Coe,E.H.
Ref Location	Submitted (12-MAY-2008) Maize Mapping Project, University of Missouri, Columbia, MO 65211, USA
Ref Pubmed
Ref Title	Direct Submission
Ref Year	2004
Rpt Family
Rpt Type
Rpt Unit
Sex
Specimen Voucher
Standard Name
Sub Clone
Sub Species
Sub Strain
Tissue Lib
Tissue Type
Transl Except
Transl Table
Translation
Transposon
Variety

Database Cross-References (2)

PubMed	15020742
Gramene Literature	Gardiner-J, Schroeder-S, Polacco-M-L, Sanchez-Villeda-H, Fang-Z, Morgante-M, Landewe-T, Fengler-K, Useche-F, Hanafey-M, Tingey-S, Chou-H, Wing-R, Soderlund-C, "Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization", Plant physiology, 2004, vol. 134, pp. 1317-1326

Sequences (2)

mRNA Sequence (1)

>AY103778 Zea mays mRNA [2303 bp].

 
          ATTCACATACCTGCATTTTTTAACCTACCGGGTATGAGAAAACAGTGAATTCATGACTACTGACAGGTAACAGCTAGTTA
ACAAATTCTGAGTATAATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCCCCGTCGCCGCGATCCGA
ACACTTCACCCGATCGACACACGCAGCCGCGACCCATCGCGACCTGACCCGACCCTCCCGAGGCCGCCAGCCTTATCCTC
TCCGCCTCCGCCTCCCGCCGTCCCCCGCGACCCATCACAAGCGCGAGTAGAAGACATGGCCTCGACGTTCGGTGCCACTT
CTACAGTTGGCCTTATGGCTGCTCCAACGGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCT
AAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGACTGGAGTCAATAAGCTTGCAGACCTAGTTGG
AGTTACACTCGGACCAAAGGGAAGGAATGTCGTTTTGGAGAGCAAGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTA
CAGTTGCAAGAGAGGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACC
AACGATCTTGCTGGAGATGGGACAACCACCTCTGTGGTCCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGGTTGTGGC
AGCTGGTGCTAATCCTGTTCAGATTACTCGTGGTATCGAGAAAACAGCGAAAGCACTAGTTGAAGAACTACGGAAGTTGT
CTAAGGAGGTTGAAGATAGTGAGCTTGCAGATGTTGCTGCTGTTAGTGCTGGCAACAACTATGAAATTGGTAACATGATA
GCAGAGGCCATGAGCAAGGTCGGTCGGAAGGGTGTGGTTACCCTCGAAGAGGGGAGGAGTTCTGAGAACTTTCTCTATGT
TGTGGAGGGAATGCAATTTGACCGTGGTTACATCTCTCCGTACTTTGTAACAGACAGTGAGAAAATGTCTGCCGAGTATG
AGAACTGCAAGCTGCTTTTGGTTGACAAAAAGATCACCAACGCAAGGGGATCTTATCAACGTTTTGGAAGAAGCCATCAG
AGGTGCATACCCAATCCTGATAATTGCTGAGGATATTGAGCAGGAGGCTCTTGCTACCCTTGTCGTCAACAAGCTCAGAG
GATCACTGAAGATCGCTGCCATCAAAGCCCCTGGTTTTGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTT
ACTGGAGCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCTGACAATTCAGTTCTTGGAACAGCTGCAAA
GGTTGTCCTTACGAAAGAGTCGACAACAATTGTTGGTGATGGCAGCACCCAGGAAGAAGTTACTAAGAGGGTTGCACAGA
TTAAAAATCTCATTGAGGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCAAAGCTTGCTGGTGGT
GTTGCTGTCATTCAGGTGGGAGCACAAACAGAAACTGAACTAAAAGAGAAGAAGTTAAGAGTTGAGGATGCCCTAAATGC
AACCAAGGCTGCTGTTGAGGAAGGTATTGTTGTTGGTGGAGGATGCACCCTTTTGCGGCTTGCAGCTAAAGTCGATGCCA
TCAAGGATACACTGGAGAACGATGAGCAGAAGGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTG
ATTGCTAAAAATGCCGGTGTCAATGGCAGCGTCGTCACTGAGAAGGTCCTTTCTAACGATAACTTCAAGTATGGTTACAA
TGCTGCTACTGGACAGTACGAGGACTTGATGGCTGCTGGTATCATTGATCCTACTAAGGTGGTGAGATGCTGTTTGGAGC
ATGCCGCGTCGGTGGCCAAGACCTTCCTGACATCTGATGTTGTGGTCGTCGATATTAAGGAGCCAGAGTCTGCGCCCCTT
GCTAACCCGATGGACAACTCTGGCTATGGATACTAATGGAGATGAGATGGCCAAGCCGCATGGGAAGAAGGGTGATCACC
ATTTTTTTTTTGGTAGGCGAGAAGAGTCGGGTCGAGGTAGTTTTTCATCATCAGATAAAAAAAGCGAGTTTGTTGTACGA
CCATTAGGCGAAAAATAAGTGGGAGGGGCTGTGTAGCCCAAATTTGTGATGTAAACTGGAGACAGACAGCAGCTAAAAAC
AAGCAGAAATTGCTGAGTGATTTTGTAACTGATTTGCAGCTATGCTGAATGCAGTTTGCACGC

Related Sequence (1)

>PCO063180_ov Zea mays subsp. mays OVERGO [40 bp]. Associated to 'AY103778' via contained_in_sequence

 
          GCAGCTATGCTGAATGCAGTTTGCACGCGACTAAACAGGA

Align All Sequences

Map Positions (12)

unclassified (6)

Map Type

Map Set

Name

Map

Position

Ext. Links

Physical

AGI FPC Oct 2004

p-bnl6.32

ctg220

1,403-1,416 bands

View Comparative Map

Details

CMap Preview

p-bnl6.32

ctg313

685-705 bands

View Comparative Map

Details

CMap Preview

p-bnl6.32

ctg453

419-460 bands

View Comparative Map

Details

CMap Preview

p-bnl6.32

ctg506

2,086-2,128 bands

View Comparative Map

Details

CMap Preview

Curated AGI FPC Oct 2004

p-bnl6.32

ctg220.5

1,403-1,416 bands

View Comparative Map

Details

CMap Preview

p-bnl6.32

ctg313.7

685-705 bands

View Comparative Map

Details

CMap Preview

Oryza sativa Japonica Group (6)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 6

810,400-814,441 bp

Details

BNL6.32

Chr. 9

4,301-4,374 bp

Details

BNL6.32

Chr. 9

12,229-12,302 bp

Details

BNL6.32

Chr. 9

20,157-20,230 bp

Details

BNL6.32

Chr. 9

28,085-28,158 bp

Details

BNL6.32

Chr. 9

36,013-36,086 bp

Details

Associations (1)

Species	Type	Name	Assoc. Type
Zea mays subsp. mays	OVERGO	PCO063180_ov	contained_in_sequence

Associated Ontologies (0)

Images (0)