ID | 4915 | ||||||
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Name | CDO1380 (GRAINGENES PROBE) | ||||||
Synonyms (6) |
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Type | RFLP | ||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||
Germplasm | |||||||
Description | |||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO1380 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.2 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0099 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | G | 82.5-82.5 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 36 | 0-0 cM | View Comparative Map | ||||
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QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 36 | 0-0 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 10 | 0-0 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 2 | 112.4-112.4 cM | View Comparative Map | |||
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CNZU IR1552/Azu RI QTL 2003 | BNL6.32 | 6 | 30.3-30.3 cM | View Comparative Map | ||||
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CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 6 | 30.3-30.3 cM | View Comparative Map | ||||
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Cornell V20A/Oruf QTL 1998 | BNL6.32 | 2 | 80.4-80.4 cM | View Comparative Map | ||||
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Zhejian IR1552/Azu RI QTL 2001 | BNL6.32 | 6 | 36.1-36.1 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 2 | 119.8-119.8 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 2 | 106.9-106.9 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 4 | 76.1-76.1 cM | View Comparative Map | |||
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BNL6.32 | 5 | 177.4-177.4 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-04 | 110.4-117.9 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 4 | 97.1-97.8 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | F | 64.7-64.7 cM | View Comparative Map | ||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 4 | 103.1-103.1 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 23,155,628-23,157,327 bp | View Comparative Map | |||
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BNL6.32 | Chr. 2 | 23,155,633-23,157,327 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Avena sativa | QTL | AQDF282 | qtl_marker |
Avena sativa | QTL | AQDF283 | qtl_marker |
Avena sativa | QTL | AQDF284 | qtl_marker |
Sorghum bicolor | QTL | AQGN016 | qtl_marker |
Zizania palustris | QTL | AQK016 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 4.05 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.05 | bin_marker |
Avena sativa | Probed Site | cdo1380a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1380b | maizegdb_to_gramene |
Avena sativa | EST | AA231833 | related_sequence |
Avena sativa | EST | BE439201 | related_sequence |
Avena sativa | EST | AA231886 | related_sequence |
CDO1380 BROWS Autorad: Survey blot of the probe CDO1380 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO1380 SL Autorad: Survey blot of the probe CDO1380 for the BS125/2/BS125/WLO2 population |