ID | 4818 | ||||||||
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Name | CDO400 (GRAINGENES PROBE) | ||||||||
Synonyms (8) |
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Type | RFLP | ||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||
Germplasm | |||||||||
Description | |||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO400 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0.8 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0110 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | E | 110.6-110.6 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 14 | 18.8-18.8 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Barley consensus 2003 | BNL6.32 | 1H | 114-114 cM | View Comparative Map | |||
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BNL6.32 | 5H | 84.2-84.2 cM | View Comparative Map | |||||
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QTL | Tadmor/Er Apm RI RFLP/AFLP/SSR QTL 1998 | BNL6.32 | 5H | 266.7-266.7 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 5B | 68-68 cM | View Comparative Map | |||
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QTL | Wheat composite QTL 2004 | BNL6.32 | 5B | 68-68 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | CNZU IR1552/Azu RI QTL 2003 | BNL6.32 | 2 | 130.7-130.7 cM | View Comparative Map | |||
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CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 2 | 130.7-130.7 cM | View Comparative Map | ||||
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Zhejian IR1552/Azu RI QTL 2001 | BNL6.32 | 2 | 97-97 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 2 | 130.2-130.2 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 2 | 102.4-102.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 4 | 82.5-82.5 cM | View Comparative Map | |||
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BNL6.32 | 5 | 199.2-199.2 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-10 | 101.8-101.8 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 10 | 79.7-79.7 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | F | 62.3-62.3 cM | View Comparative Map | ||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 10 | 90.9-90.9 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,444,633-25,444,776 bp | View Comparative Map | |||
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BNL6.32 | Chr. 2 | 25,446,370-25,446,496 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Triticum aestivum | Breakpoint Interval | 5BL14-0.75-0.76 | Wheat-EST-BI |
Triticum aestivum | Breakpoint Interval | 5DL1-0.60-0.74 | Wheat-EST-BI |
Oryza sativa | QTL | AQEL010 | qtl_marker |
Sorghum bicolor | QTL | AQGN064 | qtl_marker |
Sorghum bicolor | QTL | AQGN066 | qtl_marker |
Hordeum vulgare | QTL | AQGZ058 | qtl_marker |
Hordeum vulgare | QTL | AQGZ059 | qtl_marker |
Hordeum vulgare | QTL | AQGZ060 | qtl_marker |
Sorghum bicolor | QTL | AQHL039 | qtl_marker |
Sorghum bicolor | QTL | AQHL042 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 4.05 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.05 | bin_marker |
Avena sativa | Probed Site | cdo400a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo400b | maizegdb_to_gramene |
Avena sativa | EST | AA231759 | related_sequence |
Avena sativa | EST | BE439111 | related_sequence |
CDO400 SL Autorad: Survey blot of the probe CDO400 for the BS125/2/BS125/WLO2 population |