ID | 4816 | ||||||
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Name | CDO241 (GRAINGENES PROBE) | ||||||
Synonyms (6) |
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MAIZEGDB PROBE | p-cdo241 | ||||||
Type | RFLP | ||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||
Germplasm | |||||||
Description | |||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO241 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
TAAAGCCAAGACCAGCAAGGTGTGTAAGAGACCGTGAAAATGACTGCGCCAGAGACAACCATTCTTTATCCTGATAGAGG
GGGTAACATCCACACTTTCAGAGCCATCACACCTTGTGCGCTCTTTGACGTCCTTACTCCACCATATTCTGCTGAGAAGG
GGAGAGACTGTTCATACTTCCGGAAGTCTTCAGTGAAGGAACCACCTGGTATACACAGCCCTTGAAACAGGATTATTGGT
TTTATCTCTTGGTCCTTTTGATATGCCAGTTCTGAACTGTGTTAACATTTCCTTGAAACAATTTCAGTTGTT
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | E | 39.1-39.1 cM | View Comparative Map | |||
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BNL6.32 | E | 57.9-57.9 cM | View Comparative Map | |||||
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Oat, KxO, 2003 | BNL6.32 | 24_26_34 | 41.6-41.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 1b | 83-83 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | TTU IRIR 2000 | BNL6.32 | 4 | 28-28 cM | View Comparative Map | |||
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QTL | TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 4 | 28-28 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 4 | 12.5-12.5 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 4 | 12.55-12.55 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 3 | 94.6-94.6 cM | View Comparative Map | |||
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UMC 1998 | BNL6.32 | 3 | 108.3-108.3 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 166.5-166.5 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 3,571,596-3,571,801 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQAL017 | qtl_marker |
Oryza sativa | QTL | AQAL022 | qtl_marker |
Oryza sativa | QTL | AQAL040 | qtl_marker |
Oryza sativa | QTL | AQAL063 | qtl_marker |
Oryza sativa | QTL | AQGC025 | qtl_marker |
Oryza sativa | QTL | AQGC031 | qtl_marker |
Zizania palustris | QTL | AQK026 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 3.06 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.08 | bin_marker |
Avena sativa | Probed Site | cdo241a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo241b | maizegdb_to_gramene |
Avena sativa | EST | AA231643 | related_sequence |