ID | 4633 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Name | CDO1173 (GRAINGENES PROBE) | ||||||||
Synonyms (7) |
|
||||||||
Type | RFLP | ||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||
Germplasm | |||||||||
Description | |||||||||
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | CDO1173 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.5 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
CGCGCGAGCTACTCGACCTATCTGAACGACGAACCAATGCCTGACGCCGCTTCAGAAAAGGAGCAGGGGAAATGAGTATT
TCAAGCAGAAAGAAGTTTGCCGAAGCGATCGAGTGCTACTCGAGGAGCATCGCTTTGTCTCCCACGGCGGTCGCCTTCGC
GAACCGAGCTATGGCATACCTTAAACTAAG
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell Diploid 1995 | BNL6.32 | A | 46.9-46.9 cM | View Comparative Map | |||
|
||||||||
BNL6.32 | A | 96.6-96.6 cM | View Comparative Map | |||||
|
||||||||
Oat, KxO, 2003 | BNL6.32 | 4_12 | 45.7-45.7 cM | View Comparative Map | ||||
|
||||||||
BNL6.32 | 5 | 67.1-67.1 cM | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Composite 2004 | BNL6.32 | 1B | 53-53 cM | View Comparative Map | |||
|
||||||||
BNL6.32 | 1D | 53-53 cM | View Comparative Map | |||||
|
||||||||
Cornell Synthetic/Opata 1995 | BNL6.32 | 1B | 35.9-35.9 cM | View Comparative Map | ||||
|
||||||||
QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 1B | 35.9-35.9 cM | View Comparative Map | |||
|
||||||||
Wheat composite QTL 2004 | BNL6.32 | 1A | 53-53 cM | View Comparative Map | ||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 5 | 23-23 cM | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 5 | 24.1-24.1 cM | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 21.3-21.3 cM | View Comparative Map | |||
|
||||||||
Cornell RFLP 2001 | BNL6.32 | 5 | 25.2-25.2 cM | View Comparative Map | ||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | IBM 2002 | BNL6.32 | 6 | 57.1-57.1 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQCT003 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.03 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 6.01 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.05 | bin_marker |
Avena sativa | Probed Site | cdo1173a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1173b | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1173c | maizegdb_to_gramene |
Avena sativa | EST | AA231927 | related_sequence |
CDO1173 BROWS Autorad: Survey blot of the probe CDO1173 for the comparative barley/rice/oat/wheat/sugarcane project |