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Zea mays EST "AI855309"
| ID | 29050 | ||||
|---|---|---|---|---|---|
| Name | AI855309 (GenBank Locus Name) | ||||
| Synonyms (3) |
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| AGI FPC CLONE | c0139P12 | ||||
GenBank Accession  | AI855309 | ||||
| GenBank GI | 5499442 | ||||
| GenBank Version | AI855309.1 | ||||
| MaizeGDB cDNA | p-std603014C08 | ||||
| MaizeGDB cDNA - EST | CL1139_2 | ||||
| MaizeGDB DNA Probe | p-IKS#46 | ||||
| MAIZEGDB EST | CL1139_2 | ||||
| Type | EST | ||||
| Species | Zea mays (Maize) [ GR_tax:014450 ] | ||||
| Germplasm | |||||
| Description | 603014C08.x1 603 - stressed root cDNA library from Wang/Bohnert lab Zea mays cDNA, mRNA sequence. |
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| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | AI855309 |
| Clone | Inv-CW1 |
| Comment |
Contact: Walbot V Department of Biological Sciences Stanford University 855 California Ave, Palo Alto, CA 94304, USA Tel: 650 723 2227 Fax: 650 725 8221 Email: walbot@stanford.edu Plate: 603014 row: C column: 08. |
| Date Created | 2000-10-17 |
| Date Updated | 2000-10-17 |
| Lab Host | E. coli XL Gold |
| Map | 5L |
| Note |
Organ: root; Vector: pBluescriptII SK(+) XR; Seedling stressed root cDNA library from Wang/Bohnert lab |
| Origin | |
| Ref Authors | Walbot,V. |
| Ref Location | Unpublished (1999) |
| Ref Medline | |
| Ref Pubmed | |
| Ref Title | Maize ESTs from various cDNA libraries sequenced at Stanford University |
| Ref Year | 1999 |
Database Cross-References (4)
Sequences (2)
EST Sequence (1)
Related Sequence (1)
Align All Sequences
Map Positions (21)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | IBM 2002 | BNL6.32 | 5 | 337.5-337.5 cM | View Comparative Map | |||
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| SSR IBM 2001 | BNL6.32 | 5 | 285.5-285.5 cM | View Comparative Map | ||||
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| Physical | AGI FPC Oct 2004 | p-bnl6.32 | ctg68 | 1,288-1,319 bands | View Comparative Map | |||
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| p-bnl6.32 | ctg80 | 2,561-2,595 bands | View Comparative Map | |||||
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| p-bnl6.32 | ctg107 | 2,905-2,942 bands | View Comparative Map | |||||
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| p-bnl6.32 | ctg232 | 1,188-1,191 bands | View Comparative Map | |||||
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| p-bnl6.32 | ctg263 | 1,437-1,479 bands | View Comparative Map | |||||
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| p-bnl6.32 | ctg277 | 21-54 bands | View Comparative Map | |||||
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| Curated AGI FPC Oct 2004 | BNL6.32 | ctg232.5 | 1,173-1,197 bands | View Comparative Map | ||||
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| p-bnl6.32 | ctg232.5 | 1,188-1,191 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links |
|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | p-bnl6.32 | Chr. 2 | 28,710,954-28,711,035 bp | |
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| p-bnl6.32 | Chr. 9 | 311-392 bp | |||
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| p-bnl6.32 | Chr. 9 | 407-481 bp | |||
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| p-bnl6.32 | Chr. 9 | 8,239-8,320 bp | |||
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| p-bnl6.32 | Chr. 9 | 8,335-8,409 bp | |||
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| p-bnl6.32 | Chr. 9 | 16,167-16,248 bp | |||
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| p-bnl6.32 | Chr. 9 | 16,263-16,337 bp | |||
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| p-bnl6.32 | Chr. 9 | 24,095-24,176 bp | |||
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| p-bnl6.32 | Chr. 9 | 24,191-24,265 bp | |||
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| p-bnl6.32 | Chr. 9 | 32,023-32,104 bp | |||
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| p-bnl6.32 | Chr. 9 | 32,119-32,193 bp | |||
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Associations (3)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Zea mays subsp. mays | OVERGO | PCO136243_ov | hybridisation |
| Zea mays subsp. mays | OVERGO | CL1139_2_ov | hybridisation |
| Zea mays subsp. mays | OVERGO | CL1139_2_ov | contained_in_sequence |
Associated Ontologies (2)
| Term Type | Term Name | Term Accession | |
|---|---|---|---|
| Growth Stage | 01-seedling | GRO:0007007 | Search |
| Plant Structure | seedling | PO:0008037 | Search |
Images (0)
