Oryza sativa Japonica Group EST "D15442"

ID	15856
Name	D15442 (GenBank Locus Name)
Synonyms (1)	T77
GenBank Accession	D15442
GenBank GI	286635
GenBank Version	D15442.1
Type	EST
Species	Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ]
Germplasm
Description	RICC0641A Rice callus Oryza sativa Japonica Group cDNA clone C0641A, mRNA sequence.
Tags ()	None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	D15442
Clone	C0641A
Comment	Contact: Takuji Sasaki National Institute of Agrobiological Resources Rice Genome Research Program, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan Email: URL:http://rgp.dna.affrc.go.jp/ PROJECT ='RGP' Seq primer: oligo(dT).
Date Created	2003-02-24
Date Updated	2003-02-24
Lab Host
Map
Note	Vector: pBluescript II SK+; Site_1: SalI; Site_2: NotI; cDNA prepared from rice callus mRNAs by using oligo(dT) as a primer and ligating to the SalI-NotI site of pBluescript II SK+ phagemid.
Origin
Ref Authors	Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Ref Location	Plant J. 6 (4), 615-624 (1994)
Ref Medline
Ref Pubmed	7987417
Ref Title	Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library
Ref Year	1994

Database Cross-References (3)

PubMed	7987417
Gramene Literature	Miyao-A, Zhong-H-S, Monna-L, Yano-M, Yamamoto-K, Havukkala-I, Minobe-Y, Sasaki-T, "Characterization and genetic mapping of simple sequence repeats in the rice genome", DNA research : an international journal for rapid publication of reports on genes and genomes, 1996, vol. 3, pp. 233-238
Gramene Literature	Sasaki-T, Song-J, Koga-Ban-Y, Matsui-E, Fang-F, Higo-H, Nagasaki-H, Hori-M, Miya-M, Murayama-Kayano-E, "Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library", The Plant journal : for cell and molecular biology, 1994, vol. 6, pp. 615-624

Sequences (1)

EST Sequence (1)

>D15442 Oryza sativa Japonica Group EST [359 bp].

 
          CGAGGCGAAACCACCACACCTCACCGTCGAATCGAATCCAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGGGAT
CCACGAGCACGTCGAGGGGATCAAGGCGCACTGGGCGAAGAACTTCTCCTTCCTCGACTACTTCAAGAAGGTCTACGGCC
GGGACAAGCCCCTCCCCAAGTGGACCGATGCCGACGTCGACGAGTTCATCGCCTCCGATCCCGTCTACGGCCCGCAGCTC
AAGGCGATGAGGGAATCCAGGAAGTTCGCGCTCGGCGGGGCTCTCGTCGGCGGCGCGCACCTTGGCGGCATCGCCTTCAA
GTACTTCAAGGCCCCGAACGGTGTCGTCCTGGTCAACGG

Map Positions (3)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

p-bnl6.32

Chr. 8

682,581-683,120 bp

Details

Oryza sativa (2)

Map Type

Map Set

Name

Map

Position

Ext. Links

Genetic

JRGP RFLP 2000

BNL6.32

3.6-3.6 cM

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Details

CMap Preview

QTL

JRGP Nip/Kas F2 QTL 2000

BNL6.32

3.6-3.6 cM

View Comparative Map

Details

CMap Preview

Associations (0)

Associated Ontologies (3)

Term Type	Term Name	Term Accession
Environment	tissue culture growth media	EO:0007266	Search
Growth Stage	in-vitro culture stage	GRO:0007000	Search
Plant Structure	cultured plant callus	PO:0000009	Search

Images (0)