ID | 11174 | ||||
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Name | RM233 | ||||
Synonyms (4) |
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Type | SSR | ||||
Species | Oryza sativa Indica Group (Oryza sativa indica) [ GR_tax:013682 ] | ||||
Germplasm | |||||
Description | |||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM233 |
Repeat Motif | (CT)20 |
Anneal Temperature | 55 |
Expected PCR Product Size | 162 |
Sequence Source | AF344053 |
Linkage Group | |
Remarks |
Gramene Literature | Chen-X, Temnykh-S, Xu-Y, Cho-Y-G, McCouch-S-R, "Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.)", Theoretical and applied genetics, 1997, vol. 95, pp. 553-567 |
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Gramene Diversity Rice Marker | 193 |
Gramene Diversity Rice Marker | 263 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 2,069,848-2,070,184 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 2 | 16.3-16.3 cM | View Comparative Map | |||
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BNL6.32 | 5 | 110-110 cM | View Comparative Map | |||||
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KRGRP 1998 | BNL6.32 | 2 | 3.6-3.6 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 63.5-63.5 cM | View Comparative Map | |||||
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QTL | CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 2 | 32.7-32.7 cM | View Comparative Map | |||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 5 | 109-109 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 16.3-16.3 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 110-110 cM | View Comparative Map | |||||
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INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 2 | 5.9-5.9 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 124.1-124.1 cM | View Comparative Map | |||||
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KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 2 | 3.6-3.6 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 63.5-63.5 cM | View Comparative Map | |||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 2 | 9.7-9.7 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 96.4-96.4 cM | View Comparative Map | |||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 2 | 9.7-9.7 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 2 | 8.6-8.6 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 78.8-78.8 cM | View Comparative Map | |||||
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BNL6.32 | 5 | 80.3-80.3 cM | View Comparative Map | |||||
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TTU IR64/Orufi RI QTL 2003 | BNL6.32 | 2 | 86.7-86.7 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQA032 | qtl_marker |
Oryza sativa | QTL | AQEI033 | qtl_marker |
Oryza sativa | QTL | AQEI085 | qtl_marker |
Oryza sativa | QTL | AQEI114 | qtl_marker |
Oryza sativa | QTL | AQFJ040 | qtl_marker |
Oryza sativa | QTL | AQGH002 | qtl_marker |
Oryza sativa | QTL | AQGH019 | qtl_marker |
Oryza sativa | QTL | AQGP055 | qtl_marker |
Oryza sativa | QTL | AQGP072 | qtl_marker |
Oryza sativa | QTL | AQGS048 | qtl_marker |
Oryza sativa | QTL | AQGS059 | qtl_marker |
Oryza sativa | QTL | AQU012 | qtl_marker |
Oryza sativa | QTL | AQU038 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT12432 | equivalent_to |
Oryza sativa | QTL | CQAE10 | qtl_marker |
Oryza sativa Indica Group | Primer | RM233_forward | primer_forward |
Oryza sativa Indica Group | Primer | RM233_reverse | primer_reverse |
Oryza sativa Indica Group | Genomic DNA | AF344053 | contained_in_sequence |
Oryza sativa Indica Group | Genomic DNA | AF344053 | source_sequence |