ID | 10717 |
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Name | RM279 |
Synonyms (1) | CT743 |
Type | SSR |
Species | Oryza sativa Indica Group (Oryza sativa indica) [ GR_tax:013682 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM279 |
Repeat Motif | (GA)16 |
Anneal Temperature | 55 |
Expected PCR Product Size | 174 |
Sequence Source | AF344105 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 2,882,052-2,882,215 bp | View Comparative Map | |||
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BNL6.32 | Chr. 2 | 2,882,082-2,882,252 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 2 | 2,882,082-2,882,252 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | CIAT SSR 2006 | BNL6.32 | 2 | 13.2-13.2 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 2 | 17.3-17.3 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 2 | 13.8-13.8 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 2 | 11.2-11.2 cM | View Comparative Map | |||
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CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 2 | 43.8-43.8 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 17.3-17.3 cM | View Comparative Map | ||||
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Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | ||||
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INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 2 | 12.4-12.4 cM | View Comparative Map | ||||
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IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 2 | 28.2-28.2 cM | View Comparative Map | ||||
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IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 2 | 16.3-16.3 cM | View Comparative Map | ||||
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LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 2 | 23.6-23.6 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 2 | 16.1-16.1 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 2 | 10.8-10.8 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQCE034 | qtl_marker |
Oryza sativa | QTL | AQCU062 | qtl_marker |
Oryza sativa | QTL | AQEI085 | qtl_marker |
Oryza sativa | QTL | AQEI114 | qtl_marker |
Oryza sativa | QTL | AQFU009 | qtl_marker |
Oryza sativa | QTL | AQGH002 | qtl_marker |
Oryza sativa | QTL | AQGH019 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT12486 | equivalent_to |
Oryza sativa Japonica Group | SSR | AUT12487 | equivalent_to |
Oryza sativa Indica Group | Primer | RM279_forward | primer_forward |
Oryza sativa Indica Group | Primer | RM279_reverse | primer_reverse |
Oryza sativa Indica Group | Genomic DNA | AF344105 | contained_in_sequence |
Oryza sativa Indica Group | Genomic DNA | AF344105 | source_sequence |
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