ID | 11275 |
---|---|
Name | RM518 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | RM518 |
Repeat Motif | (TC)15 |
Anneal Temperature | 55 |
Expected PCR Product Size | 171 |
Sequence Source | AQ690034 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 2,030,135-2,030,305 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | Chr. 4 | 2,030,163-2,030,355 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | Chr. 4 | 2,030,176-2,030,291 bp | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 4 | 25.5-25.5 cM | View Comparative Map | |||
|
||||||||
IRMI 2003 | BNL6.32 | 4 | 7.9-7.9 cM | View Comparative Map | ||||
|
||||||||
QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 4 | 34.6-34.6 cM | View Comparative Map | |||
|
||||||||
CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 4 | 0-0 cM | View Comparative Map | ||||
|
||||||||
Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 25.5-25.5 cM | View Comparative Map | ||||
|
||||||||
Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 4 | 8.6-8.6 cM | View Comparative Map | ||||
|
||||||||
NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 4 | 6.4-6.4 cM | View Comparative Map | ||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 4 | 7.9-7.9 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQED007 | qtl_marker |
Oryza sativa | QTL | AQED014 | qtl_marker |
Oryza sativa | QTL | AQGD017 | qtl_marker |
Oryza sativa | QTL | AQGD020 | qtl_marker |
Oryza sativa | QTL | AQGD023 | qtl_marker |
Oryza sativa | QTL | AQGD025 | qtl_marker |
Oryza sativa | QTL | AQGD027 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT16352 | equivalent_to |
Oryza sativa Japonica Group | SSR | MRG4414.RGP4414 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM518_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM518_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ690034 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ690034 | source_sequence |