ID | 11235 |
---|---|
Name | RM489 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | RM489 |
Repeat Motif | (ATA)8 |
Anneal Temperature | 55 |
Expected PCR Product Size | 271 |
Sequence Source | AQ446270 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 4,333,680-4,333,950 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | Chr. 3 | 4,333,725-4,333,944 bp | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 3 | 29.2-29.2 cM | View Comparative Map | |||
|
||||||||
IRMI 2003 | BNL6.32 | 3 | 20.3-20.3 cM | View Comparative Map | ||||
|
||||||||
QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 3 | 13.5-13.5 cM | View Comparative Map | |||
|
||||||||
NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 3 | 41-41 cM | View Comparative Map | ||||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQHF001 | qtl_marker |
Oryza sativa | QTL | AQHF009 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT14489 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM489_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM489_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ446270 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ446270 | source_sequence |