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Zea mays mRNA "AY104566"
| ID | 986231 |
|---|---|
| Name | AY104566 (GenBank Locus Name) |
| Synonyms (0) | None. |
Deprecated GenBank GI  | 21207644 |
| GenBank Accession | AY104566 |
| GenBank GI | 188018506 |
| GenBank Version | AY104566.1 |
| GenBank Version | AY104566.2 |
| MaizeGDB cDNA - EST | PCO130617 |
| MaizeGDB INDEL | AY104566_IDP |
| MAIZEGDB EST | PCO130617 |
| Type | mRNA |
| Species | Zea mays (Maize) [ GR_tax:014450 ] |
| Germplasm | |
| Description | Zea mays PCO130617 mRNA sequence. |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | AY104566 |
| Date Created | |
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| Allele | |
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| Chromosome | |
| Citation | |
| Clone | |
| Clone Lib | Maize Mapping Project/DuPont Cornsensus Library |
| Codon Start | |
| Comment |
On May 13, 2008 this sequence version replaced gi:21207644. If you are interested in getting corresponding physical clones, these are publicly available from ZmDB and may be found by BLAST searching at MSL, maizemap.org; ZmDB, www.zmdb.iastate.edu; TIGR, www.tigr.org; or NCBI, www.ncbi.nlm.nih.gov. When the source of the maize cDNA sequences is either Virginia Walbot, Stanford or Pat Schnable, Iowa State, then clones may be requested from ZmDB: www.zmdb.iastate.edu. |
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| Germline | |
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| Isolation Source | |
| Keyword | HTC |
| Lab Host | |
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| Macronuclear | |
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| Mod Base | |
| Mol Type | mRNA |
| Note |
this sequence is part of a project of EST assemblies resulting from the application of public contigs to seed DuPont contigs; this resource was assembled by DuPont as part of a collaboration for the overgo addressing of BACs in conjunction with the Maize Mapping Project |
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| Plasmid | |
| Pop Variant | |
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| Pseudo | |
| Rearranged | |
| Ref Authors | Coe,E.H. |
| Ref Location |
Submitted (13-MAY-2008) Maize Mapping Project, University of Missouri, Columbia, MO 65211, USA |
| Ref Pubmed | |
| Ref Title | Direct Submission |
| Ref Year | 2004 |
| Rpt Family | |
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| Transl Except | |
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| Transposon | |
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Database Cross-References (1)
| PubMed | 15020742 |
|---|
Sequences (2)
mRNA Sequence (1)
Related Sequence (1)
Align All Sequences
Map Positions (9)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated AGI FPC Oct 2004 | p-bnl6.32 | ctg343.8 | 454-472 bands | View Comparative Map | |||
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| FPC Chr maize May 2006 | p-bnl6.32 | 8 | 116,375,001-116,375,001 bp | |||||
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| FPC maize May 2006 | p-bnl6.32 | ctg353 | 470-470 bands | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links |
|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | p-bnl6.32 | Chr. 2 | 34,071,049-34,072,181 bp | |
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| p-bnl6.32 | Chr. 2 | 34,094,236-34,095,371 bp | |||
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| p-bnl6.32 | Chr. 2 | 34,118,788-34,119,920 bp | |||
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| p-bnl6.32 | Chr. 2 | 34,148,505-34,149,637 bp | |||
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| p-bnl6.32 | Chr. 3 | 21,488,983-21,491,701 bp | |||
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| p-bnl6.32 | Chr. 9 | 8,635,637-8,637,608 bp | |||
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Associations (6)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Zea mays subsp. mays | OVERGO | PCO130617_ov | contained_in_sequence |
| Zea mays subsp. mays | Maize Bin | Bin 8.05 | bin_marker |
| Zea mays | Clone | ZMMBBb0146K14 | hybridisation |
| Zea mays | Clone | ZMMBBb0156K06 | hybridisation |
| Zea mays | Clone | ZMMBBc0058K20 | hybridisation |
| Zea mays | Clone | ZMMBBc0194F08 | hybridisation |
Associated Ontologies (0)
Images (0)
