Sorghum bicolor GSS "BH245940"

ID	770167
Name	BH245940 (GenBank Accession )
Synonyms (1)	pSB1500.1
Deprecated Gramene Marker Acc	BH245940-3
GenBank GI	16961741
GenBank Version	BH245940.1
Type	GSS
Species	Sorghum bicolor (Sorghum) [ GR_tax:014159 ]
Germplasm
Description	pSB1500.1 S. bicolor BTx623 PstI-digested total genomic DNA library Sorghum bicolor genomic clone pSB1500, genomic survey sequence.
Tags ()	None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	BH245940
Read Direction
Insert Size
Template
Cell Line
Cell Type
Clone	pSB1500
Clone Lib	S. bicolor BTx623 PstI-digested total genomic DNA library
Comment	Contact: Paterson AH Plant Genome Mapping Laboratory University of Georgia, Center for Applied Genetic Technologies Riverbend Research Laboratory, Room 162, 110 Riverbend Road, Athens, GA 30602 USA Tel: 7065830169 Fax: 7065830160 Email: paterson@uga.edu Linkage group A Seq primer: M13F Class: RFLP probe.
Date Created	2001-11-16
Date Updated	2001-11-16
Dev Stage	Immature
Lab Host
Map
Note	Vector: pT7/T3; Site_1: PstI; Sorghum bicolor (L.) Moench
Origin
Ref Authors	Schloss,S.J., Mitchell,S.E., White,G.M., Kukatla,R., Bowers,J.E., Paterson,A.H. and Kresovich,S.
Ref Location	Theor. Appl. Genet. 105 (6-7), 9
Ref Medline
Ref Pubmed	12582917
Ref Title	Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor (L.) Moench
Ref Year	2002
Sex
Tissue Type	Leaf

Database Cross-References (2)

PubMed	12582917
Gramene Literature	Schloss-J, Mitchell-E, White-M, Kukatla-R, Bowers-E, Paterson-H, Kresovich-S, "Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor (L.) Moench", Theor Appl Genet, 2002, vol. 105, pp. 912-920

Sequences (2)

GSS Sequence (1)

>BH245940 Sorghum bicolor GSS [486 bp].

 
          CTGCAGGCTCTCTCTATTACTAGTTTTGGATCCCTAGCTTGTAATAGTTCAGCAATTTCTCCATCACCTGTGCAGACTAA
AACGACGCCTTTAGATGGATACCTACTATATACATCTATATATGGATCTGGTAAGAGCGAGGATATCTCATAATTCTGAT
TTCTCCAGGCTGGAAGTTGGCTTGTTCTGACGAACACTTGGTATTGTGACAGTCATTGGATTCTCATCTACAGAAGGACA
CCAAGCATGTGCTGTCTACTTCTTTAATTTGGTTCCCTTGGGCTCTTGTGGTGTAACTCTGGCATGGCATGCACCCTGAA
GATGTTTCTCTTGATATATACTATTACCAGCAAAACAGCTGAACTTTGCATCCTAGATCATTTCCAAAGGCAGTCCAGGT
GCAGTGCAGATGTTGTGTTCATGCAAGCATACAAAGATATAATTCTACTAATATAGTATATATGCTGTCAGAGACAATTA
AGACTT

Related Sequence (1)

>SOG1887 Sorghum bicolor OVERGO [40 bp]. Associated to 'BH245940' via contained_in_sequence

 
          TCTGAATGATTTAGGAAACAACGTGCAATACAACTCTTTG

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Map Positions (1)

Sorghum bicolor (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Physical

TAMU FPC 2004

BNL6.32

ctg666

4-51 bands

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Details

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Associations (2)

Species	Type	Name	Assoc. Type
Sorghum bicolor	RFLP	pSB1500	shared_synonym
Sorghum bicolor	OVERGO	SOG1887	contained_in_sequence

Associated Ontologies (1)

Term Type	Term Name	Term Accession
Plant Structure	vascular leaf	PO:0009025	Search

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