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Oryza sativa QTL "EQC0039"
| ID | 52523 |
|---|---|
| Name |
EQC0039 (QTL ACCESSION  ) |
| Synonyms (1) | EQC0039-SDDOR |
| Published Symbol | sd12.1 |
| TO TERM | TO:0000253 (seed dormancy) |
| Trait Name | seed dormancy |
| Trait Symbol | SDDOR |
| Type | QTL |
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
| Germplasm | |
| Description | The seed dormancy QTL sd12.1 is one of the three loci in the F2 population derived from cultivated Oryza sativa and the annual wild species O. nivara. The O. nivara allele produces an O.nivara like phenotype of seed dormancy and where the gene action is dominant. O. nivara seeds exhibit stronger seed dormancy and delay in germination than O.sativa. Seed dormancy in O. nivara is effected by the embryo, as shown by its retention when the pericarp is removed. |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | EQC0039 |
| Chromosome | 12 |
Database Cross-References (1)
Sequences (0)
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 3,185,384-3,185,631 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 12 | 26.7-41.8 cM | View Comparative Map | |||
|
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Associations (4)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza sativa Indica Group | SSR | RM247 | qtl_marker |
| Oryza sativa | SSR | MRG5905 | qtl_marker |
| Oryza sativa Indica Group | SSR | RM19 | qtl_marker |
| Oryza sativa | SSR | MRG4854 | qtl_marker |
Associated Ontologies (7)
| Term Type | Term Name | Term Accession | |
|---|---|---|---|
| Growth Stage | 09-mature grain stage | GRO:0007045 | Search |
| Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
| Plant Growth and Development Stage | sporophyte dormant stage | PO:0007132 | Search |
| Plant Structure | seed | PO:0009010 | Search |
| Environment | unknown environment | EO:0007403 | Search |
| Trait | seed dormancy | TO:0000253 | Search |
| Taxonomy | Oryza sativa | GR_tax:013681 | Search |
Images (0)
