ID | 5101 | ||||||||||
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Name | CDO348 (GRAINGENES PROBE) | ||||||||||
Synonyms (10) |
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Type | RFLP | ||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||
Germplasm | |||||||||||
Description | |||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO348 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.4 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
ACTTGTAACATATCTTGCTCGAAAATCCCTTGCTTATGTCTGACAGATGAGCTGCCTCGGTATTGAAGCACAACTACATA
CACAGGTTTTATAGCTTAGAAGATAGTACTGGATTATCTGCCACTCGTCTAACAAGTTCGCCTCGATTTGACTTAATACA
GCAGCTGCCACTAGTACACCAAAAATCCTTAAACTGGCAAGTTACAGAGAATAGCCTTCGGTGCTATTCACTCGGGATTG
ACCTTTTGCTTCTTAGAGTGCTCCTTGTTTTTCTTGGCGTCACGGCGCTCCCGCTTCAGACCCTTGATGTCGCTTGTCAA
GGCCAATTTTGAAACCTCTTGGTCTGGAATGTAGACCCTGCCCAACTTGCCATCAATTGGATTATCGGACACATTTTTCA
CCTTCTTAGCATGACCAGGAGCCTTCATAGCGTCTTTCTGCAAACTTTCAGCTGGACGT
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Oat, KxO, 2003 | BNL6.32 | 7_10_28 | 131-131 cM | View Comparative Map | |||
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BNL6.32 | 24_26_34 | 63.3-63.3 cM | View Comparative Map | |||||
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QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 28 | 0-0 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Barley consensus - 1995 | BNL6.32 | 7H | -18.3--18.3 cM | View Comparative Map | |||
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Barley consensus 2 - 1996 | BNL6.32 | 5H | 66.9-66.9 cM | View Comparative Map | ||||
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BNL6.32 | 7H | 57.6-57.6 cM | View Comparative Map | |||||
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NABGMP SxM 1993 | BNL6.32 | 5 | 69.5-69.5 cM | View Comparative Map | ||||
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QTL | Steptoe/Morex DH RFLP QTL 2006 | BNL6.32 | 5H | 69.5-69.5 cM | View Comparative Map | |||
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UMN Fred/Stan QTL 2003 | BNL6.32 | 5H | 84.6-84.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 5B | 108-108 cM | View Comparative Map | |||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 5B | 115.8-115.8 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 5B | 115.8-115.8 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 3R | 108-108 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 5 | 148.2-148.2 cM | View Comparative Map | |||
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CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 5 | 121.9-121.9 cM | View Comparative Map | ||||
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Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 1 | 101.5-101.5 cM | View Comparative Map | ||||
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TAMU Lem/Teq RI QTL 1995 | BNL6.32 | 1 | 187-187 cM | View Comparative Map | ||||
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BNL6.32 | 6 | 0-0 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 1 | 80.9-80.9 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 1 | 63.2-63.2 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Huazhong RFLP 1997 | BNL6.32 | 1 | 75.3-75.3 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Paterson 2003 | BNL6.32 | G | 36.2-36.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 5 | 256.7-256.7 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 24,979,201-24,979,681 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQAK012 | qtl_marker |
Oryza sativa | QTL | AQCF007 | qtl_marker |
Oryza sativa | QTL | AQCF018 | qtl_marker |
Oryza sativa | QTL | AQCF032 | qtl_marker |
Oryza sativa | QTL | AQCF033 | qtl_marker |
Oryza sativa | QTL | AQCF034 | qtl_marker |
Avena sativa | QTL | AQDF226 | qtl_marker |
Oryza sativa | QTL | AQDR027 | qtl_marker |
Oryza sativa | QTL | AQDR040 | qtl_marker |
Oryza sativa | QTL | AQDR050 | qtl_marker |
Oryza sativa | QTL | AQDR121 | qtl_marker |
Oryza sativa | QTL | AQDR123 | qtl_marker |
Oryza sativa | QTL | AQDR168 | qtl_marker |
Oryza sativa | QTL | AQDR170 | qtl_marker |
Oryza sativa | QTL | AQDS041 | qtl_marker |
Oryza sativa | QTL | AQEJ075 | qtl_marker |
Oryza sativa | QTL | AQEJ077 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.06 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 6.06 | bin_marker |
Oryza sativa | QTL | CQAS2 | qtl_marker |
Oryza sativa | QTL | CQAS1 | qtl_marker |
Oryza sativa | QTL | CQAS13 | qtl_marker |
Avena sativa | Probed Site | cdo348a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo348b | maizegdb_to_gramene |
Avena sativa | EST | BE439086 | related_sequence |