ID | 50873 |
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Name | CQE78 (QTL ACCESSION ) |
Synonyms (1) | CQE78-SLFAR |
TO TERM | TO:0000562 (specific leaf area) |
Trait Name | specific leaf area |
Trait Symbol | SLFAR |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | The specific leaf area (SLA) was calculated as leaf area/dry weight. The area of the flag leaf was measured with a leaf area meter (Li-Cor, Neb.), and leaves were oven-dried at 80C for 2 days and weighed. Assay is an indicator of Carbon di-oxide absorption by mesophyll tissue in leaves. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQE78 |
Chromosome | 11 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 3,033,385-8,298,357 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 16.7-45.6 cM | View Comparative Map | |||
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Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | flag leaf | PO:0020103 | Search |
Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
Growth Stage | A-vegetative stage | GRO:0007139 | Search |
Growth Stage | B-reproductive stage | GRO:0007140 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Plant Growth and Development Stage | sporophyte vegetative stage | PO:0007134 | Search |
Plant Structure | vascular leaf | PO:0009025 | Search |
Trait | specific leaf area | TO:0000562 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |